Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2858 GTTTGTGATCAGAATAAAGTGAATGGCAGTGATGTTTCATATGCTAATGGCAATGTAACAAATTCATATGAGGTGAAGACAGAGTCATTTAGAAAGGTTAAAGCTAGGGAAATGACTTGTATGCCTTCTAACATTGACCTTCATGAATGGGGAGAAACAAGCATCCCTAACACTTCATCAAGAACTGCTAGCAGCACTATTCATAATTCTTCAACTCATTCCTTAAACCCTACAAGTCATTTCCTTTCTCAGCTTAGCCTCATTCCTGGTAGTGTAAGCTTCAGACTTAGCAGAACAACCAGTTTAGGGTCACCAAGGCCTTATCCTGTTTCTTCTGCAAGTCTCTCAATATTTGACAACGAAGATGAGTGTAATCTCCATCCTAGATCTCCTGTAAATTCGATTGACAGAAGAGAAACACAACAATGCAATAACCTGCTTCAGGCATCTTTTTTCAATCAAATACACGCACAATCTCATGAAGATGCTTCTAATAATTTAAGGTCAAATGTCCCAACATCAGGTACACTAGCAAACTTGCAGAGAAATCCTACAGATAGAGTTCCCACAAGAGAAGGGCTGGATGTGAACTTATTTTCTCCAAGAATTCAAACTGAGACAGAAATTGTTGACACTAGACGTATTGATAGACGAAATGGCACTCGAGAATCTGTCGAACAGAATGTTCCTTTTACCGGAACTTTAAGTGTTGGAAGGCTTCATGATAGAGTTCTTGGTGGATCAACATTTCCTGACCTCACCTTTTGCCCTCTGCAACATGAAAGAGAGCTGAGAAATGGTAGCCTCCATAGCCAGGATATTGAGAGGCAATCGGTGGAGGGAGATTCAAGAGTGTTACCATCTGATCATACTACTATTAATTCTTCTACTTCTACCATGTCTAACTCCATGCTTGGTATCCAAGACAATGAGGTTGAGACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATATTTCTGGACATGATAGATCATGTATCTTGTCTGGTCAACATAGAGATGGTCATTGTACATGCCGAATCAACAATCCTAACACTAATTCAAATGACGACACCGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTACTGGATCTGTTCCTGCACCTAATGATGTTGTTGATTCCTTGCCTGTCAAGTTATATCAGAAGTTGCACAAGCATCAAGAGGATGGTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGACGGAGACAACATGCGAGTACTGCCGTGCCATCACGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTTTGTAGAGGGGACATATGCATATCTGATTCAACACCAACAGAGAACTAG 1545 0.4136 VCDQNKVNGSDVSYANGNVTNSYEVKTESFRKVKAREMTCMPSNIDLHEWGETSIPNTSSRTASSTIHNSSTHSLNPTSHFLSQLSLIPGSVSFRLSRTTSLGSPRPYPVSSASLSIFDNEDECNLHPRSPVNSIDRRETQQCNNLLQASFFNQIHAQSHEDASNNLRSNVPTSGTLANLQRNPTDRVPTREGLDVNLFSPRIQTETEIVDTRRIDRRNGTRESVEQNVPFTGTLSVGRLHDRVLGGSTFPDLTFCPLQHERELRNGSLHSQDIERQSVEGDSRVLPSDHTTINSSTSTMSNSMLGIQDNEVETSRLREGRYQDLLEHRSNFLERRRRMRSQVRALQRLGSRFENISGHDRSCILSGQHRDGHCTCRINNPNTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSTGSVPAPNDVVDSLPVKLYQKLHKHQEDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPTEN* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2858 514 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 514 - -
Pvu3g2858 514 MobiDBLite consensus disorder prediction 284 302 - -
Pvu3g2858 514 MobiDBLite consensus disorder prediction 160 186 - -
Pvu3g2858 514 CDD RING-H2_PA-TM-RING 458 501 - -
Pvu3g2858 514 MobiDBLite consensus disorder prediction 280 302 - -
Pvu3g2858 514 ProSiteProfiles Zinc finger RING-type profile. 459 501 IPR001841 -
Pvu3g2858 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 505 IPR013083 -
Pvu3g2858 514 SUPERFAMILY RING/U-box 437 507 - -
Pvu3g2858 514 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 514 - -
Pvu3g2858 514 SMART ring_2 459 500 IPR001841 -
Pvu3g2858 514 Pfam Ring finger domain 458 501 IPR001841 -
Pvu3g2858 514 MobiDBLite consensus disorder prediction 160 192 - -
Pvu3g2858 514 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2858 Pvu-Chr3 50306825 50309849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2858 191 508 C3H Transcription Factor Family AT5G45290 59.939 3.80e-112 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2858 - - gmx:100800896 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2858 3 50306825 50309849 Pvu3g2858 3 50306825 50309849 ECH
Pvu2g1277 2 24988426 24993535 Pvu3g2858 3 50306825 50309849 PCT