Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2848 ATGGAGCATGATGAATCTGTGCTGAGTGGCACAGTGGGAAGCATACTAATCGCCATGGGTTCAGCAAGTTTCGGCATCACAATATTCCATCTCATTATCCTTTGTCGGACTCATAACCGTCTTCCTGTCACCGACCAAAATCCACCACCACAACCACAACAACAACCACGCGCCGTTAACATTTCGCTGCCGCCACGCCCCATTCCGATCCACACATACCAAAAGAAGAAGAAAACCGATGATGAGGTGGCGGCGGAGGGCGAAGACGACGAAGATTGCACGTGCGCCGTGTGCTTGGGGGACTTCGAAGAGGGTGAAGAGTTGAGGACGTTGCCGGAATGCATGCACTCTTTCCACGTCGCCTGCATTGATACGTGGCTCTCTTCCAGCTCCAGTTGCCCCGTTTGCCGTGCTCATGCCACGCCCTCGCCGGCGGTGGAGCACCCTTCGCCGGAGCTTGCTTCCGCTGCGTCCAATGCGCATCACATGATAGATATCAGGCAAATTGCTCGCTTTCAAAATGGCTAA 528 0.5417 MEHDESVLSGTVGSILIAMGSASFGITIFHLIILCRTHNRLPVTDQNPPPQPQQQPRAVNISLPPRPIPIHTYQKKKKTDDEVAAEGEDDEDCTCAVCLGDFEEGEELRTLPECMHSFHVACIDTWLSSSSSCPVCRAHATPSPAVEHPSPELASAASNAHHMIDIRQIARFQNG* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2848 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 153 IPR044675 -
Pvu3g2848 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Pvu3g2848 175 SUPERFAMILY RING/U-box 94 143 - -
Pvu3g2848 175 Pfam Ring finger domain 94 137 IPR001841 -
Pvu3g2848 175 SMART ring_2 95 136 IPR001841 -
Pvu3g2848 175 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 12 153 - -
Pvu3g2848 175 MobiDBLite consensus disorder prediction 43 86 - -
Pvu3g2848 175 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2848 Pvu-Chr3 50234736 50235263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2848 15 142 C3H Transcription Factor Family AT2G17450 37.500 1.90e-22 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2848 - - vra:106765957 254.218