Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2844 ATGAAGCATAACAACGTCATCCCCAGTGGACACTTCCGGAAACATTGGCAAAACTATGTGAGGACTTGGTTTAATCAACCAGCGCGGAAGACCAGAAGACGATTAGCTCGGCAGAAGAAGGCTGTCAAAATTTTCCCCAGGCCAACTGCTGGACCTCTCAGGCCTGTTGTTCATGGTCAGACCTTGAAATACAACATGAAAATCAGAGCTGGGAGAGGATTTTCTCTTGAAGAGTTGAAGAGTGCTGGAATTCCCAAAAAGCTTGCTCCAACTATTGGGATCGCTGTTGATCATAGGCGCAAGAACCGTTCTTTGGAGGGTCTTCAGGGTAATGTGCAGAGGCTCAAAACATACAAGGCCAAGTTGGTTGTGTTCCCAAGACAGGCACGAAAGGTCAAGACTGGTGATTCTAGCGCCGAAGAACTAGCAAGTGCTACCCAAGTTCAGGGTCCATTCTTGCCCATTGTAAGGGAGAAGCCAACTGTTGACCTTGTTAAGGTAACAGATGAAATGAAGGCGTTCAAAGCTTACTATAAGCTTCGTCTTGAACGCACCAACCAACGTCACTATGGTGCCCGTTTAAAGAAAGCTGCTGAAGCAGAGAAGGAAGACAAGAAATAG 621 0.467 MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKIRAGRGFSLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQGNVQRLKTYKAKLVVFPRQARKVKTGDSSAEELASATQVQGPFLPIVREKPTVDLVKVTDEMKAFKAYYKLRLERTNQRHYGARLKKAAEAEKEDKK* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2844 206 Pfam Ribosomal protein L13e 6 184 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pvu3g2844 206 Gene3D - 166 206 - -
Pvu3g2844 206 ProSitePatterns Ribosomal protein L13e signature. 69 83 IPR018256 GO:0003735|GO:0005840|GO:0006412
Pvu3g2844 206 PANTHER 60S RIBOSOMAL PROTEIN L13 2 206 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pvu3g2844 206 Hamap 50S ribosomal protein L13e [rpl13e]. 44 127 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pvu3g2844 206 PANTHER 60S RIBOSOMAL PROTEIN L13 2 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2844 Pvu-Chr3 50222379 50224361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2844 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 84.293 3.34e-123 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2844 K02873 - gmx:100782333 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1318 2 25729322 25731579 Pvu3g2844 3 50222379 50224361 PCT