Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2831 GCGAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGAAAACTTCCAGGATCTTTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGACGGCAGAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCGAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGTCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTGATATTGTCTGGTCCTTCAGGTCCACCATTAACATCCGTGCCGAATCAGAATTCTGAGCTGGTTCTAACTCCTAATGTTCCTGATATAATGGTTTCACCTCCTGAGGATGAACATTTGAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTTGGCTCAAAGGAACATACGTACTATGTCTGGAGACTCTACTCATTTGCACAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGGAGATGGATTCCTCCCTCATTACCAATATCAAAAAGTCCTGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCCATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGCGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCAGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGACGTATTACTGCTGAAGCCCTAAAGGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCAGACTGGTTTCTATTTTCAGATGGTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAATTCCATTCCATTCCATATGCGGGGATGCACCTGAGATTGAGCAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCAAGGTTGTTAAGCCTTGAGGAGGCAGAAAAACAAAGAGGTTATGAACTAGATGATGAATTGAAATATGCCCACAACCAAGGGACTTCTGGGAAGTATTCAAGTAATCTGCAAGAAACAAGTGCAGAGTCTGAACCAGTAGGACTTTCTGCGTGGAACCAATATGGGGATGAAGATTTGCAGTCACAGAGTAGAAGTTCCATATCTTTAGCCTCTACACTTCCTATTCCGCAACCTGAACTTAAGGCATTCACAAAAAAGGAAAAGAGTGATCCAGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAACAAAGGAAAGGTGGAAAAAATCTTGGCTTAAGTTACTCATCTTCTGGTAGTGAGAATGTGGATGATGGCCCTATTAAAGCTGATGAATTAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCACACCGACAGTGGAATGAATGAAGAGCAAAGGCAAAAGCTAAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAGTCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATCGACAAGAAAGTTGAGTCACATCGAAAACGGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAGGCAATAGAAGAACATCAGAGAGGAGGGATAGGCATGATGTCTCAAGGAAACGGCACCGAAGCCGGAGTCCAAGTGGTAGTCCACAACCAAAATTATCTGGGAAAGACAAGGACAGAGAACATGATTTAGAAAGGGACCGAGACAGGCAAAGGGACAGAAGTTATGATTTTGATATTGAAAGAGGAAAGGACCGGCACCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGATAGAAGCAGGGATAGGGAGAGGAGAAGACGGACCAAATAA 2442 0.4394 ASRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVSPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPISKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDGYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQGTSGKYSSNLQETSAESEPVGLSAWNQYGDEDLQSQSRSSISLASTLPIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRKGGKNLGLSYSSSGSENVDDGPIKADELESAAGTSFPAHTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKRLQAEYGLSDSGEDGKGNRRTSERRDRHDVSRKRHRSRSPSGSPQPKLSGKDKDREHDLERDRDRQRDRSYDFDIERGKDRHREKSGSRERDDHDKDRSRDRERRRRTK* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2831 813 SUPERFAMILY Surp module (SWAP domain) 152 233 IPR035967 GO:0003723|GO:0006396
Pvu3g2831 813 MobiDBLite consensus disorder prediction 589 621 - -
Pvu3g2831 813 Pfam Surp module 176 228 IPR000061 GO:0003723|GO:0006396
Pvu3g2831 813 SMART cwf21_2 662 711 IPR013170 -
Pvu3g2831 813 Coils Coil 689 709 - -
Pvu3g2831 813 Gene3D - 12 112 IPR012677 -
Pvu3g2831 813 SMART surpneu2 176 230 IPR000061 GO:0003723|GO:0006396
Pvu3g2831 813 Gene3D - 286 432 IPR008942 -
Pvu3g2831 813 PANTHER - 2 809 - -
Pvu3g2831 813 SUPERFAMILY RNA-binding domain, RBD 22 118 IPR035979 GO:0003676
Pvu3g2831 813 SUPERFAMILY ENTH/VHS domain 290 427 IPR008942 -
Pvu3g2831 813 SMART 558neu5 293 428 IPR006569 -
Pvu3g2831 813 ProSiteProfiles SURP motif repeat profile. 178 221 IPR000061 GO:0003723|GO:0006396
Pvu3g2831 813 MobiDBLite consensus disorder prediction 533 552 - -
Pvu3g2831 813 MobiDBLite consensus disorder prediction 255 286 - -
Pvu3g2831 813 Gene3D - 662 713 - -
Pvu3g2831 813 MobiDBLite consensus disorder prediction 752 806 - -
Pvu3g2831 813 Coils Coil 663 683 - -
Pvu3g2831 813 MobiDBLite consensus disorder prediction 260 286 - -
Pvu3g2831 813 MobiDBLite consensus disorder prediction 686 813 - -
Pvu3g2831 813 MobiDBLite consensus disorder prediction 534 552 - -
Pvu3g2831 813 MobiDBLite consensus disorder prediction 1 25 - -
Pvu3g2831 813 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 103 IPR000504 GO:0003723
Pvu3g2831 813 Coils Coil 291 311 - -
Pvu3g2831 813 Pfam CID domain 293 421 IPR006569 -
Pvu3g2831 813 Gene3D Surp module 164 233 IPR035967 GO:0003723|GO:0006396
Pvu3g2831 813 ProSiteProfiles SAP motif profile. 480 514 IPR003034 -
Pvu3g2831 813 PANTHER RNA PROCESSING PROTEIN LD23810P 2 809 - -
Pvu3g2831 813 MobiDBLite consensus disorder prediction 686 732 - -
Pvu3g2831 813 CDD RRM_SR140 28 111 IPR035009 -
Pvu3g2831 813 Pfam cwf21 domain 663 709 IPR013170 -
Pvu3g2831 813 MobiDBLite consensus disorder prediction 588 667 - -
Pvu3g2831 813 ProSiteProfiles CID domain profile. 286 431 IPR006569 -
Pvu3g2831 813 SMART rrm1_1 30 106 IPR000504 GO:0003723
Pvu3g2831 813 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 110 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2831 26 106 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.47e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2831 K12842 - gmx:100776093 1443.33