Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2828 ATGGCCACGCTGCTCAGAAAACTCTGCGAATCCGCGTCGCTGAAGCGGTCGGGTACCGCTCCGAACCCGAACCCGAATCCATCATCGGAACGCGCGCCCTCTCCTCTGGGCGCCTTCGACCCTCTCCCCGCCGACATACTCATGCAAATCGTGCGACTCTTGGGCCCCAAACACGCCGCCAGACTCAGCCTCCTCAGCAAGTCGTGGCGATCCCTTGTCTCCGACAACGACCTCTGGGTGCACTTCCTCCGCACGCACCACCCTCACTCGGCGCTCTTCGCCGAAACCGCTCTTAGCTCCGGCTACCCTCTTCCGACCTTGGCTGCTCAGAGCTCGCCACGTGGCTCGCTCCAGCATGTTTTCGCCCTCCGCGAACGCCTCCCTCCGTCCGTTGTCATCGACGGGGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAAGACTCTTATCCTTCTGGGCGATTCGCGACCTTTTTGGAATTTGGTAACGTTGAAACGCCAATGTATACTAGACTTCGACATTTTTTCGGGACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAAGCAGCTGTTGTTTCTATACCAATTTGTCACTATGATGATACTGAATCTGCCAAAGCATCAAGACAGCAGCTTAAAGAAGCAATCTATGCTGCCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCTGCAAAACAAACTTCTGGGATTGCTGTTAATATAGGCTTTCAAGTGACATCTATTGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTAAAGCTTACTGGATTTCTTAGAAAACAAATGCAAGAGAACAACATAAGTTTTGAATCTCTATACACTGTTCGCACTCTGAAAGAGAAGCTATGTTATGTGGCTGCTGACTATGAAGCTGAGCTACTGAAAGATACACAGGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGGGAGATCTTATTCCAGCCACGACTTGCTGGGGTGCGAGCAATGGGTTTGCACCAGGCCATTGCACTTTGTATGGATCATTGCTATTCTGCAGAATTAGCAGTTAACAAGGATTGGTACAAGACTGTTGTCTTATCAGGGGGAACTGCCTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAGCTTCATTTGTCACTTCCTCCTTCTATATCCAATGGAATTAAAGTCATACCTCCTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAACGATTATTGGCAGTTTGAGCACCTTTCCTGGCCCATGGTGTACCACAAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGGATTTGGTGA 1404 0.4858 MATLLRKLCESASLKRSGTAPNPNPNPSSERAPSPLGAFDPLPADILMQIVRLLGPKHAARLSLLSKSWRSLVSDNDLWVHFLRTHHPHSALFAETALSSGYPLPTLAAQSSPRGSLQHVFALRERLPPSVVIDGGSGYCKFGWSKDSYPSGRFATFLEFGNVETPMYTRLRHFFGTIYNRMQVKPSSQAAVVSIPICHYDDTESAKASRQQLKEAIYAALFDMNVPAVCALNQGTLALYAAKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLRKQMQENNISFESLYTVRTLKEKLCYVAADYEAELLKDTQASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLHQAIALCMDHCYSAELAVNKDWYKTVVLSGGTACLPGLAERLEKELHLSLPPSISNGIKVIPPPFGVDTAWFGGTIIGSLSTFPGPWCTTKKQFRQKSKLNRIW* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2828 467 Gene3D - 131 459 - -
Pvu3g2828 467 Gene3D - 35 122 - -
Pvu3g2828 467 SMART fbox_2 42 82 IPR001810 GO:0005515
Pvu3g2828 467 Gene3D - 235 432 - -
Pvu3g2828 467 SUPERFAMILY F-box domain 26 99 IPR036047 GO:0005515
Pvu3g2828 467 MobiDBLite consensus disorder prediction 13 35 - -
Pvu3g2828 467 SMART actin_3 128 457 IPR004000 -
Pvu3g2828 467 Gene3D Actin; Chain A, domain 4 278 360 - -
Pvu3g2828 467 Pfam Actin 203 453 IPR004000 -
Pvu3g2828 467 PANTHER MACRONUCLEAR ACTIN 83 458 - -
Pvu3g2828 467 CDD NBD_sugar-kinase_HSP70_actin 131 275 - -
Pvu3g2828 467 PANTHER ACTIN 83 458 IPR004000 -
Pvu3g2828 467 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Pvu3g2828 467 Pfam F-box domain 42 80 IPR001810 GO:0005515
Pvu3g2828 467 SUPERFAMILY Actin-like ATPase domain 129 250 IPR043129 -
Pvu3g2828 467 SUPERFAMILY Actin-like ATPase domain 245 454 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2828 Pvu-Chr3 50095746 50103261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2828 177 450 Cytoskeleton Gene Families AT3G12110 33.922 4.39e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2828 K16616 - gmx:100804254 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2828 3 50095746 50103261 Pvu3g2828 3 50095746 50103261 ECH