Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2815 ATGGAAGAAAACCAAGAGGCTCAGCATCGAAGGGAAAATCGAGGGTCGGTTCCTGGGGAAGGAGAAGGGTTAGGGGGTAATGGAGGAGGTGTTCACGACAATGGGATTCGTTCTTTCACGTGTCATATCTGCGAGAAAGGTTTCAGTTCAGGTAAAGCTCTTGGTGGGCACATGAGAATCCACAACCTTTCTAGAAAGCAGGTTCAGAAGGAGAAACAAGGTGGTGGTGATGTGAAATCCAAGGCGGCGAAATGGGTGTTGGTGGATGGCAACCCTGTTTGTTCTGTTTGTGGAAAGAGTTTTTCTTCGTTGAAGTCCTTGTTCGGGCACATGAGGTCTCACACTGAGAAGGCCAAGAGGGGAATTCAAAGCGTCACTCCGATCGTTGGCGCTTCCTCCAATTCCACTTCTTCCTCTACCCTTTCTGATGATTTTGCTGTTGATCTCTGTGGAGTTCTCAGGGGTTGGTCTGTGACTGCCAAGAGGGGCCGCAGAAGCCCTTCTTGCAGCAAATCGAATTCTGGTTTGGAAGATGGCGATGAGATTGAGCCACGGATGCAAGAGGCTGCGTATGAGCTCATGATGCTGGCCAGAGGGAGTCCCAGATGGGAGCAAGAGGTTGGTGCCGATCCGATTCAAGAACATCCGTGCAGAAAGAGGGGGAATGAAGAGGAGTTGCTGCAACCAGTTTTTGGGAATTCTGATGACGTGAAGAACAAGAAGAGAAACAGAAAGAAAGTGAAATTAACAGAATTAGCATCAACCGAGGAGGGGAACAGGTTCTCCAGCTGCAGAAAATGCAATACAACTTTCCAAAGTCACCAATCTTGGAAGGATCATCTATGCAGCCTTCAAAATTCCAAGAACATTCAGCCTCAGTCAGATGGAAAAGAGGAGCATCATGCCAAAACAAACAGAAAAACAGGAACAGAAACTGTTCTTGAGGGTAGTGGTTTGGAAGCCACGAAGTGTGAAGTTTTGAACAAGACTTTCTCAACTGTTGAAGCCATTGGGGAGCACAAGAGATCTGATTGGACCAGCATGGCAGAAGCTGAGTCAGCAGCTCAGGCAACCTCTTCAAACGTGGAAACTGGTCAGAATTGTTCCAAGGTTTTTAGTTTTGATCTTAATGAGATTCCTGCTATGGATGTGGAAGAGGGTGTTCAATCAGACTTGTTTATTCCTGCCAATATTCTGACATCATCCAGCTATGTTCCTCATCCTAAAAAAAACCTCTGTCACTAA 1245 0.4667 MEENQEAQHRRENRGSVPGEGEGLGGNGGGVHDNGIRSFTCHICEKGFSSGKALGGHMRIHNLSRKQVQKEKQGGGDVKSKAAKWVLVDGNPVCSVCGKSFSSLKSLFGHMRSHTEKAKRGIQSVTPIVGASSNSTSSSTLSDDFAVDLCGVLRGWSVTAKRGRRSPSCSKSNSGLEDGDEIEPRMQEAAYELMMLARGSPRWEQEVGADPIQEHPCRKRGNEEELLQPVFGNSDDVKNKKRNRKKVKLTELASTEEGNRFSSCRKCNTTFQSHQSWKDHLCSLQNSKNIQPQSDGKEEHHAKTNRKTGTETVLEGSGLEATKCEVLNKTFSTVEAIGEHKRSDWTSMAEAESAAQATSSNVETGQNCSKVFSFDLNEIPAMDVEEGVQSDLFIPANILTSSSYVPHPKKNLCH* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2815 414 SMART c2h2final6 39 61 IPR013087 -
Pvu3g2815 414 SMART c2h2final6 92 114 IPR013087 -
Pvu3g2815 414 Pfam C2H2-type zinc finger 39 61 - -
Pvu3g2815 414 Pfam C2H2-type zinc finger 93 115 - -
Pvu3g2815 414 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Pvu3g2815 414 Gene3D Classic Zinc Finger 29 89 - -
Pvu3g2815 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Pvu3g2815 414 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 19 279 IPR044653 GO:0003700
Pvu3g2815 414 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 312 386 IPR044653 GO:0003700
Pvu3g2815 414 MobiDBLite consensus disorder prediction 288 310 - -
Pvu3g2815 414 SUPERFAMILY beta-beta-alpha zinc fingers 93 281 IPR036236 -
Pvu3g2815 414 Gene3D Classic Zinc Finger 93 121 - -
Pvu3g2815 414 MobiDBLite consensus disorder prediction 293 308 - -
Pvu3g2815 414 MobiDBLite consensus disorder prediction 1 31 - -
Pvu3g2815 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Pvu3g2815 414 MobiDBLite consensus disorder prediction 1 17 - -
Pvu3g2815 414 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 312 386 - -
Pvu3g2815 414 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 19 279 - -
Pvu3g2815 414 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pvu3g2815 414 SUPERFAMILY beta-beta-alpha zinc fingers 37 64 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2815 37 127 C2H2 Transcription Factor Family AT2G26940 36.283 6.20e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g2815 zf-C2H2_6 4.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2815 - - vra:106765955 558.91