Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2814 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGTTGGTGGTTCCTATGATGAGAGAAGGTTTCTAGATGAAAGGTATCCAAGGGATCCAGTTTATCAGAGAAATAATTTCCACCCTGACATTTTGGACAGGGATGCCTACCTCCCGCCAGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTACCCACTTGACAGAGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATTTGAAAGGTTTCGGGATGGCTATACCGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTGTAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCAGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGACGTGAATCACGTGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGATCTGAGTCCTCGTAGTAGTAGGAGGCACGAGCGCTCACGCTCACGATCACATTCTCGTGGTTCGCGTTCACGTTCTCGATCCCGTTCCCATTCTCACTCGCATTCTCATTCCCGATCTCAGTCTCGTGGATATGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAGAGTGAAAGACGTAGGGATCGTGATGATAAACGACAGCGGGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTTGTGAAAGGTCTTTCGCAGAAGACAACCGATGAAGATCTATACCAAATCCTTGCGGAATGGGGGCCCCTTCGTCACGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGCAATGATGGACAAACTAGGAGACGATGGTCTTGTTGTCGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACAGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGGACATCCTGCTATCAGTGTAATGAGCCCCGAACTGACGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAGCAGCTTCTGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTAGTGAGAGATAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTGCACTTTTATTCGGTGGAAGACGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCAAGCAGTCTTGCGGCTGCTGCTATTGAAGCTGCAACATTTGCCCAACAGTATGATTCAGTAGGATGGGCTCCGAAAGAATATAATCCAGATGACAAACTATCTACTGGTCCAGAGCAACCTGGCACTGGAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCCGAACCTCCTAAAACGTCTGATGGTACTGGAAGTAAAAAGGTCATTTCTGCTCCAGCTACTACTGTTACATCAGTTGAGAAGCCAGCTTCATTAGCAGATGCTGTCCAGGCTGCAGCTACAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAGATCAAAGGAAATAAAACTCGCATCAAAGAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTATTGACAATGTGGAAGCAGAGGAGCCATGAAGGACAGGCTACTAGAGTTGCTCTGGAAGACAATCAGCCTTCTGTTTCAGTCGATGATAGGTCATATTCTGCCGGGCATTCTGCTAAGAATAAGTCAAAAAATGAGACTATGGTAAGGGACTCTAATGCTTCAAATCCAGGAATCCACACAACTCTTGCCCAGGTTGCTGCTATTGATCCTCAGGCACAGCCACGGCCCGTTAGTAATAGTATTGGAGGCACTGTGATGGGGGTCATAAGGGGCTCAGGAAGAGGGGTTGCTAAATCAGATACTTATTCAGGTTCTACATCTGTTGCATCATCTATGCTTAGTTCATCTTCAGCAAATGTTGATCCACATGCAGTTGCTACTCCCTTTAGAACCGATGTATCTGCCCTGGGTTCATATACACCATCTGCCACAATTGGAAGTGGCCGAAGAAGGTTTTCGGAAATGCCTCTTCCTTCTTCAGCTCATAAGGAACAACCTCAGTCAACTTACCGGGATCGTGCTGCTGAGAGGAGGAGTTTGTATGGCTCGTCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGAGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATACAATGCCGTTCCCTCCTGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACATTGATACCTTCGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAAGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACAGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGTGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAGATGTCAGACAGTTAA 3219 0.4554 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFLDERYPRDPVYQRNNFHPDILDRDAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEFERFRDGYTGIENYGDRGYDKPARFVGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGDLSPRSSRRHERSRSRSHSRGSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREGSYTESRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGPEQPGTGVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPPKTSDGTGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKERSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSVDDRSYSAGHSAKNKSKNETMVRDSNASNPGIHTTLAQVAAIDPQAQPRPVSNSIGGTVMGVIRGSGRGVAKSDTYSGSTSVASSMLSSSSANVDPHAVATPFRTDVSALGSYTPSATIGSGRRRFSEMPLPSSAHKEQPQSTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDTMPFPPGVGGGRVVGDVNIDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDS* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2814 1072 CDD RRM1_RRM2_RBM5_like 315 395 - -
Pvu3g2814 1072 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 554 IPR000504 GO:0003723
Pvu3g2814 1072 CDD RRM1_RRM2_RBM5_like 472 552 - -
Pvu3g2814 1072 Gene3D - 417 449 - -
Pvu3g2814 1072 ProSiteProfiles Zinc finger RanBP2 type profile. 419 448 IPR001876 -
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 163 314 - -
Pvu3g2814 1072 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 542 IPR000504 GO:0003723
Pvu3g2814 1072 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 379 IPR000504 GO:0003723
Pvu3g2814 1072 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 397 IPR000504 GO:0003723
Pvu3g2814 1072 Pfam G-patch domain 995 1036 IPR000467 GO:0003676
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 64 86 - -
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 229 258 - -
Pvu3g2814 1072 ProSiteProfiles G-patch domain profile. 994 1040 IPR000467 GO:0003676
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 774 803 - -
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 259 311 - -
Pvu3g2814 1072 Pfam OCRE domain 616 664 IPR041591 -
Pvu3g2814 1072 SMART G-patch_5 992 1038 IPR000467 GO:0003676
Pvu3g2814 1072 PANTHER RNA-BINDING PROTEIN 218 1069 - -
Pvu3g2814 1072 PANTHER RNA-BINDING PROTEIN 38 219 - -
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 163 228 - -
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 892 938 - -
Pvu3g2814 1072 SUPERFAMILY RNA-binding domain, RBD 307 402 IPR035979 GO:0003676
Pvu3g2814 1072 Gene3D - 457 577 IPR012677 -
Pvu3g2814 1072 Gene3D - 284 416 IPR012677 -
Pvu3g2814 1072 SMART zf_4 421 445 IPR001876 -
Pvu3g2814 1072 CDD OCRE_SUA_like 613 665 IPR035623 -
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 592 615 - -
Pvu3g2814 1072 SMART rrm1_1 475 550 IPR000504 GO:0003723
Pvu3g2814 1072 SMART rrm1_1 318 393 IPR000504 GO:0003723
Pvu3g2814 1072 MobiDBLite consensus disorder prediction 665 691 - -
Pvu3g2814 1072 SUPERFAMILY Ran binding protein zinc finger-like 414 449 IPR036443 -
Pvu3g2814 1072 ProSitePatterns Zinc finger RanBP2-type signature. 423 442 IPR001876 -
Pvu3g2814 1072 PANTHER FI21118P1 38 219 - -
Pvu3g2814 1072 PANTHER FI21118P1 218 1069 - -
Pvu3g2814 1072 SUPERFAMILY RNA-binding domain, RBD 472 561 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2814 Pvu-Chr3 49924524 49932672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2814 316 538 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.32e-09 60.1