Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2801 ATGAATGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTGCCCGTGGAAAATTTGGCTGAAGCACAGGTTCAACCAGAAGTTTTGGATGCTCCTTTGTCCGTAGGGGATACTTCAATTCATGCTGAAAATGGGAAGGTAGAGGCAGAGGCACCTGTGGAGGATAAAATTGTGAAACCAGAAGCCAATTCTGAGTGCATTTCGCAACAAGATGTCCTAAATAGTCAAAATACAATAAACTCGGTCCCTGTTATAGACAGTGCTCCAGTTTTAAATAAAACCGAAGGTGAAAATGCATTAGATGTGAAGAGCAAAGCAGAAGAACTTCCTCAGTGTGATATGGACATAGAGAATGATTCTAATGTTTGTCAAAACAATGCTGATGATTCTGAAATGACTGTGGAGGTGAAGCCCAAAGCTTTTGAAGCTGAAAGTAAAACTTGCAATAATGGGGATTCCAACTCCGCACTCCCTATTCTTAACGAACCTAAAACAGCACATGCTGTTCAGACCGATGTAAGAGCTGAAGTCAAGAGTGGATTAGACAATGAAAATAAGTATAACGAAAAGCAGGCTGCTGTTGGACAGGCAGATAATGGAAATTTGATCTCACAGAACTTGTATTTTTTGGATCCTGAATATTCATATGATGGTAATGAGTCGGGAACAGAAGATGAGCAGTCAGCTTTTATGAAAGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGCTATGGAGATCTGTAAACAGATTGGGCGGCTATGATAAGGTCACGACATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCTATTGCTTCTAATTCCGAGCCAGTGAATGTTGAAAATCAGTGTGTCCAAGGATCAGCATCATCAGGTAGGGCACGGAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAAGGGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCATCAGACATGGTGAATGCAGTCAAAGTTGCTCACAGTAAACCATCTAAACCACAATTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATTAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTGGTTCCTGGACTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGCGGTGAGCCTGAACATTCTGACAATCCATGGGGGGTCACACCTTTCAAAAAGGTTGTGAGTTTGCCTTCAAGGATTGATACTCATCAGACATCTGCTGTGGTGACTCTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAG 1569 0.4226 MNDTKENEEAGQNVPVENLAEAQVQPEVLDAPLSVGDTSIHAENGKVEAEAPVEDKIVKPEANSECISQQDVLNSQNTINSVPVIDSAPVLNKTEGENALDVKSKAEELPQCDMDIENDSNVCQNNADDSEMTVEVKPKAFEAESKTCNNGDSNSALPILNEPKTAHAVQTDVRAEVKSGLDNENKYNEKQAAVGQADNGNLISQNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTTCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPIASNSEPVNVENQCVQGSASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKGSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2801 522 SUPERFAMILY ARID-like 219 325 IPR036431 GO:0003677
Pvu3g2801 522 ProSiteProfiles ARID domain profile. 224 315 IPR001606 GO:0003677
Pvu3g2801 522 SMART bright_3 225 316 IPR001606 GO:0003677
Pvu3g2801 522 CDD ARID 226 311 - -
Pvu3g2801 522 Pfam ARID/BRIGHT DNA binding domain 227 311 IPR001606 GO:0003677
Pvu3g2801 522 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 38 521 - -
Pvu3g2801 522 Pfam Hsp20/alpha crystallin family 439 521 IPR002068 -
Pvu3g2801 522 Gene3D - 385 522 IPR008978 -
Pvu3g2801 522 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 38 521 IPR045147 GO:0006357
Pvu3g2801 522 MobiDBLite consensus disorder prediction 1 31 - -
Pvu3g2801 522 SUPERFAMILY HSP20-like chaperones 431 518 IPR008978 -
Pvu3g2801 522 CDD ACD_sHsps_p23-like 441 517 - -
Pvu3g2801 522 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 422 522 IPR002068 -
Pvu3g2801 522 SMART ARID_2 221 311 - -
Pvu3g2801 522 Gene3D - 224 322 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2801 Pvu-Chr3 49825311 49833639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2801 208 520 ARID Transcription Factor Family AT1G76510 62.102 9.04e-133 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu3g2801 HSP20 4.9e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2801 - - vun:114176226 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1231 2 24177799 24184061 Pvu3g2801 3 49825311 49833639 PCT