Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2793 ATGACACGCGCGCTCAGACTCCTCCAATCCCAGGCGGTGCCTCCACCGGAGGCTGCCGCCACCGTCGAGTCCGACTTCGTGGTGATCCTGGCGGCGCTCCTCTGCGCGCTCATTTGCGTGGTGGGCCTCGTCGCTATCGCGCGCTGCGCCTGGCTCCGTCGGCCACCAGCTTCCGTCGGCGGCGGTGGATCCCCGCCTGCGCCGGCAAACAAGGGCCTGAAGAAGAGAGTGGTGAACTCGCTTCCGAAGTTCACGTACGCCGGCGAAGGCGATCGGTGCAAGTGGTCGGAGTGCCCGATCTGCCTGACGGAGTTTGCCGGCGGCGACGAGGTCCGCGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTTGCGTGTGTGGACACGTGGCTCTCATCGCACTCCTCGTGCCCCTCTTGTCGCGCGCCCTTCGTCGTCGCCCGCTGCCAGAAGTGCGGCCACTTCCCAGCCGTCGCCGCTGAAACCAGTGAAGCGGAGGCAAAGCCCAGTGACGGCTGCAATGGCGATGATAACAGAAATGCCGATGATAATAGGAATGTTAATGTTACCCACGGGTTTAGTAATTACAGTTTCTTGCCATGA 600 0.6367 MTRALRLLQSQAVPPPEAAATVESDFVVILAALLCALICVVGLVAIARCAWLRRPPASVGGGGSPPAPANKGLKKRVVNSLPKFTYAGEGDRCKWSECPICLTEFAGGDEVRVLPQCGHGFHVACVDTWLSSHSSCPSCRAPFVVARCQKCGHFPAVAAETSEAEAKPSDGCNGDDNRNADDNRNVNVTHGFSNYSFLP* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2793 199 MobiDBLite consensus disorder prediction 165 185 - -
Pvu3g2793 199 MobiDBLite consensus disorder prediction 169 183 - -
Pvu3g2793 199 SUPERFAMILY RING/U-box 80 146 - -
Pvu3g2793 199 SMART ring_2 98 139 IPR001841 -
Pvu3g2793 199 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 182 - -
Pvu3g2793 199 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Pvu3g2793 199 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 182 - -
Pvu3g2793 199 CDD RING-H2_PA-TM-RING 97 140 - -
Pvu3g2793 199 Pfam Ring finger domain 97 140 IPR001841 -
Pvu3g2793 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2793 Pvu-Chr3 49753078 49753899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2793 1 151 C3H Transcription Factor Family AT1G20823 59.756 2.99e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2793 - - gmx:100813341 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1219 2 23903722 23904736 Pvu3g2793 3 49753078 49753899 PCT