Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2787 ATGAGCAAAGTTTTGCTTCTTGTTCTTGTCGTCTTCTACAGTGGTTTTCCCTCAAAAGGAATCAGTTCTGTTTCTACAAGACCACGTGCTGTTAACATTGGGGCAATTTTATCTTTCAATTCCAGAATTGGCAGAGTAGCTAAAGTGGCCATACAAGCTGCAGTGGATGACGTAAATTCTGATGCAACGATTCTCAACGGAACTAAGCTTAAGATTTCAATGCTGGACACCAAATTATCCACTGGATTCCTAGGAATCATTGATTCATTTCTGTTGATGGAAAGAGAAACTGTTGCCATAATTGGTCCCCAGTACTCAGTAATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTACCTCTACTTTCATTTGCAGCAACAGACCCTACACTCACTTCACTGCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTGTACCAGATGGCTGCTGTTGCAGAAATTGCTGATCACTTTCAATGGAGAGATGTCATTGCCCTTTACGTTGATGATGATCATGGAAGAAATGGTATAGCAGCCTTAGGGGATAAGCTAGCAGAAAAACGTTGCAAAATATCATATAAAGTACCCTTTAAGCCGGATAATATAACCCTGGAAGAAACAAACAGTGCACTAATTAAGGTAGCTTTAATGGAGTCTAAGGTAATAATCATTCACATGTACACTTCTTGTGGTCTAGAAGTACTTCATGCGGCTCAGACACTTGGCATGATGGGAAGTGGTTATGTGTGGATAGCCACAGATTGGCTTTCTACAGCACTAGATTCAGACCCCTCCTTGTCAACATCTCCAACCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGCACACACCAGAATCAGACATGAAAAGAAAATTTATTTCTAGGTGGGATAAACTGAGCCGAAAAGAAAATTCTAATGAGGACCCTTTTGGATTATATATCTTTGGTTTCTACGCCTATGACACGGTTTGGGTGCTTGCTTCTGCACTGGATTCATTTTTTAAAGATGGGGGAACTTTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGAAGGGACACCCTTAATCTTGATACCATGAGGGTCTTTGTTAATGGTGGCATGTTGCTTCAAAAAGTTTTGGAAGTGAACAGAACTGGTTTAGCTGGTGAGATGGTGTTTAATCCGGATGGAAACTTAGTGCATCCATCATATGAAATCATTAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGAACCCTCTGGCCTCCATACTGGGGAACATCCTAATCACTACAATTCTAGTGATGGACTTTATGGGGTGATTTGGCCAGATCAAATGGTTTTTTCCAGCAATGGAAGAACCTTGAGAATTGGGGTGCCACTAAGAATTAGTTACCGTGAGTTTGTGTCAAGAATTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCTCTCAACTTGTTGCCTTATCCTGTTCCCTACAAGTTCATTCCATTTGGTGATGCTAAAACCAACCCATTAAATTCACATCTTCTTCACATGATAACAATCGGTGCCTTCGATGCTGTGGTGGGAGACATAACCATCACCACTAACCGAACTAAGATAGTGGACTTTACACAGCCATATATTGAGTCTGGGCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTATCACCTTTCAGTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTGGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTCAGAGGCCCTGCTAGAAGACAATTTGTCACCATTATTTGGTTTAGCTTCTCAACCCTATTTTTTGCACAAAGAGAAAAAACTGTGAGCACCCTTGGTCGCTTAGTGCTGATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTACATTGCAAGCCTCACCTCCATCCTAACTGTGGAGCAACTCTCTTCACCGGTTAAAGGAATTGAAAGCTTAGTTATAAGCAACGATCGCATTGGTTTCCTGAGGGGTTCATTTGCCGAAAGTTATCTGACAGAGGAGCTAAACATACACAGATCAAGATGTGAATACAGTATTGTTGGCCAAGAGTTCACCAAGATGGGATGGGGCTTTGTGAGTGCTTTTGTACTTTTATTTTCATTCTTCAAACTCCAAACCACTAAGAGATTGAGCATGCTTAAATTGTTGCAGGCCTTCCCAAGAGACTCTCCCCTAGCCATTGACATGTCCACTGCCATCTTAAAACTTTCAGAGAATGGTGATCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCATGCAGCTCAGAGGGTGCAAAACAAGGCATAGACCGTCTAGAGCTAAAAAGCTTTTGGAGTCTGTTCCTACTCAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGCTGCAAGGATGGCCTACCGATTTAGTAGACACTCCAATACTAACTTGGAGCACTCATCTCAATCCTCTCGTCTTCGATCGTTCCTTTCCTTTGTGAATGAAAGAGAAGAGGAAGTGAAATACAGGGCAAAGAGAAGGCGAAAGGAAAAGTGCTCTTGTAGAAAGGTTGTGCACGAAGGTGGATCTTTGGATGACTCAACTGTTAGTGTCCACATAGAAAATAATGCCACTGCGCAAGATTAA 2721 0.4171 MSKVLLLVLVVFYSGFPSKGISSVSTRPRAVNIGAILSFNSRIGRVAKVAIQAAVDDVNSDATILNGTKLKISMLDTKLSTGFLGIIDSFLLMERETVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMAAVAEIADHFQWRDVIALYVDDDHGRNGIAALGDKLAEKRCKISYKVPFKPDNITLEETNSALIKVALMESKVIIIHMYTSCGLEVLHAAQTLGMMGSGYVWIATDWLSTALDSDPSLSTSPTMNDIQGVITLRMHTPESDMKRKFISRWDKLSRKENSNEDPFGLYIFGFYAYDTVWVLASALDSFFKDGGTLSFSNDSSLNMLRRDTLNLDTMRVFVNGGMLLQKVLEVNRTGLAGEMVFNPDGNLVHPSYEIINVIGTGIRRIGYWSEPSGLHTGEHPNHYNSSDGLYGVIWPDQMVFSSNGRTLRIGVPLRISYREFVSRIEGTEMFGGYCIDVFTAALNLLPYPVPYKFIPFGDAKTNPLNSHLLHMITIGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLSPFSPMMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQFVTIIWFSFSTLFFAQREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVISNDRIGFLRGSFAESYLTEELNIHRSRCEYSIVGQEFTKMGWGFVSAFVLLFSFFKLQTTKRLSMLKLLQAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWSLFLLSGIACFIALLCYAARMAYRFSRHSNTNLEHSSQSSRLRSFLSFVNEREEEVKYRAKRRRKEKCSCRKVVHEGGSLDDSTVSVHIENNATAQD* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2787 906 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Pvu3g2787 906 PIRSF IGluLR_plant 1 905 IPR017103 -
Pvu3g2787 906 SUPERFAMILY Periplasmic binding protein-like II 445 788 - -
Pvu3g2787 906 Gene3D - 452 570 - -
Pvu3g2787 906 Pfam Bacterial extracellular solute-binding proteins, family 3 519 703 IPR001638 -
Pvu3g2787 906 Gene3D - 147 427 - -
Pvu3g2787 906 Gene3D - 741 793 - -
Pvu3g2787 906 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Pvu3g2787 906 SUPERFAMILY Periplasmic binding protein-like I 27 422 IPR028082 -
Pvu3g2787 906 Gene3D - 571 710 - -
Pvu3g2787 906 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Pvu3g2787 906 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Pvu3g2787 906 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Pvu3g2787 906 Pfam Ligand-gated ion channel 704 819 IPR001320 GO:0015276|GO:0016020
Pvu3g2787 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 755 904 - -
Pvu3g2787 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 709 728 - -
Pvu3g2787 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 710 - -
Pvu3g2787 906 Gene3D - 49 402 - -
Pvu3g2787 906 PANTHER GLUTAMATE RECEPTOR 15 710 - -
Pvu3g2787 906 PANTHER GLUTAMATE RECEPTOR 709 728 - -
Pvu3g2787 906 PANTHER GLUTAMATE RECEPTOR 755 904 - -
Pvu3g2787 906 SMART GluR_14 461 788 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2787 Pvu-Chr3 49669388 49673464 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2787 25 873 Ion Channels AT1G42540 54.308 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2787 K05387 - gmx:100789442 1469.14