Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2778 ATGCCGAAGGTTAAAGCTGATACTGCTGCTTCCGATAACAGGTTGAAGCGCAAGGGCGCTGGTGCTGGAAGGAAGCAATCGAAGAAAGCTGCCAAGGATCCTAACAAACCTAAGAGACCTCCAAGTGCTTTCTTCGTTTTTATGTCTGAGTTCAGAGAGCAGTTTAAGAAGGAACATCCAACCAACAAATCTGTGGCTGTTGTTGGTAAAGCTGGCGGTGATAGATGGAAGTCTTTGTCCGATGCCGAGAAAGCTCCCTTCATTGCTAGGGCTGAGAAGAAGAAAGAAGAGTACGAGAAGAGTATCTCAGCCTATAATAAGAAATTGGAAGGGAAACATTCAGAGGAAGAAGAGTCTGACAAGTCAAAATCTGAAGTTAACGATGAGGAGGAAGATGAGGAGGACGAGGAGGATGACGAGTGA 423 0.4563 MPKVKADTAASDNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPTNKSVAVVGKAGGDRWKSLSDAEKAPFIARAEKKKEEYEKSISAYNKKLEGKHSEEEESDKSKSEVNDEEEDEEDEEDDE* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2778 140 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Pvu3g2778 140 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Pvu3g2778 140 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Pvu3g2778 140 SMART hmgende2 36 107 IPR009071 -
Pvu3g2778 140 CDD HMGB-UBF_HMG-box 37 91 - -
Pvu3g2778 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 138 - -
Pvu3g2778 140 MobiDBLite consensus disorder prediction 122 140 - -
Pvu3g2778 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 138 IPR031061 -
Pvu3g2778 140 SUPERFAMILY HMG-box 25 108 IPR036910 -
Pvu3g2778 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Pvu3g2778 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Pvu3g2778 140 MobiDBLite consensus disorder prediction 76 121 - -
Pvu3g2778 140 Coils Coil 88 139 - -
Pvu3g2778 140 MobiDBLite consensus disorder prediction 1 140 - -
Pvu3g2778 140 Gene3D High mobility group box domain 21 122 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2778 Pvu-Chr3 49607002 49608664 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pvu3g2778 HMG_box 7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2778 K25507 K22507 gmx:100499992 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2778 3 49607002 49608664 Pvu3g2778 3 49607002 49608664 ECH