Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2771 ATGGGTGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAATGTCAACATCAATGTTCGCTGTTCTAACGGCTCTAAGTTTTCCGTTCAGACTTCCCTTGATTCCATCGTTAGTTCCTTCAAGGATCTCGTTGCTCGCAACTGCGACATGCCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAGGACGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTAGTGGTTCTGCACCTACTAATCCAACTGGCGGGACCAGTACTAGCAGCACCGATACCAATACCACAACAAATAATGCTAGAGGTGCTGGTGCGAATGAAGGTGGGAGTTTAGGAGGAGTTGGCTTTGGAGCTTCGCTGTTCCCTGGACTAGGTACCAATGGGACTGGGGGAAATGCTTTATTTGGTGAGGGATTTCCTGATCTAGAACAGATGCAGCAGCCATTTCTTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCGCCTGCCATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCCAGTACTCTCCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGATAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCATGCAACGGACCAATCAACTAATCCCTCAATTACTAGTTCTGAAGCAACTGCTGGTTCTCACTTACCTAATACTAACCCACTTCCAAATCCTTGGTCCTCTTCTGGTGCTGCAGGTGCTCAAAATAACACTAGTAGGTCGTCAGCCACTGGTGTGGGTGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTGGTCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTATTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAACCAGATTCTTGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTCAAATTCTCTTAGAGAAGTAATGCAAAATCCGGAATTCCTTCGCTTGTTTTCTTCACCTGAGACATTGCAGCAACTCTTGTCATTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAGCAATCAACACGCAGGGAATCTGGTCAAACTGGCCAAGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCTCTTATTGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAATAG 1629 0.4555 MGGDSAVEESEGVNVNINVRCSNGSKFSVQTSLDSIVSSFKDLVARNCDMPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVSGSAPTNPTGGTSTSSTDTNTTTNNARGAGANEGGSLGGVGFGASLFPGLGTNGTGGNALFGEGFPDLEQMQQPFLSNPNLVREIMNSPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHATDQSTNPSITSSEATAGSHLPNTNPLPNPWSSSGAAGAQNNTSRSSATGVGARQQGPTGLGGLGLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDSNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTRRESGQTGQGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2771 542 Gene3D - 482 542 - -
Pvu3g2771 542 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Pvu3g2771 542 PANTHER UBIQUILIN 9 542 - -
Pvu3g2771 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Pvu3g2771 542 MobiDBLite consensus disorder prediction 275 353 - -
Pvu3g2771 542 SMART ubq_7 15 86 IPR000626 GO:0005515
Pvu3g2771 542 MobiDBLite consensus disorder prediction 275 341 - -
Pvu3g2771 542 CDD Ubl_Dsk2p_like 15 87 - -
Pvu3g2771 542 Gene3D - 187 245 - -
Pvu3g2771 542 SMART uba_6 500 538 IPR015940 -
Pvu3g2771 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Pvu3g2771 542 MobiDBLite consensus disorder prediction 84 116 - -
Pvu3g2771 542 MobiDBLite consensus disorder prediction 447 467 - -
Pvu3g2771 542 CDD UBA_PLICs 500 538 - -
Pvu3g2771 542 Gene3D - 12 99 - -
Pvu3g2771 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Pvu3g2771 542 SUPERFAMILY Ubiquitin-like 15 103 IPR029071 -
Pvu3g2771 542 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Pvu3g2771 542 SMART CBM 356 397 IPR006636 -
Pvu3g2771 542 SMART CBM 138 179 IPR006636 -
Pvu3g2771 542 SMART CBM 401 435 IPR006636 -
Pvu3g2771 542 SMART CBM 192 231 IPR006636 -
Pvu3g2771 542 MobiDBLite consensus disorder prediction 84 114 - -
Pvu3g2771 542 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2771 Pvu-Chr3 49537900 49545539 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2771 K04523 - gmx:100776447 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2771 3 49537900 49545539 Pvu3g2771 3 49537900 49545539 ECH
Pvu2g1191 2 23444764 23451887 Pvu3g2771 3 49537900 49545539 PCT