Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2749 ATGGACTCTGTGCCAAATCAATGCCCTTTGACGGGTTTCTTGGGGAATTTCGTTCAGAAGGTCAAAAGGGTTGGTACCCTCTTCGTTTCTGCCATCATTGGGAACATCTTATCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGAACTTTGTTGGGGGCCATGACTGGAGCGTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGTTGTGCCTTATACCTGATTGATGTGTTTGCTAGCCTATTGAGTGGGAGACTAGTGCGTGAAAGAATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTATTGAGATAACCTTTGATGAGGTTCAAAACCTCTTTGACATTGGTGTGGCCAAAGGCTTACCGAGAGATTCAGTTGAAAAGATCCCAACCATCACAATTACAAGTGACAACAATGTTGATGCTTCTGGGGAGAGAGTTTCATGTTCTGTTTGCCTCCAGGTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGCTTCTTGTCCATTATGCAGAAGGGATCTGTGA 687 0.4556 MDSVPNQCPLTGFLGNFVQKVKRVGTLFVSAIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWKSDESGIGCALYLIDVFASLLSGRLVRERIGPAMLSAVQSQMGAIEITFDEVQNLFDIGVAKGLPRDSVEKIPTITITSDNNVDASGERVSCSVCLQVGETGRSLPHCHHMFHLPCIDKWLIKHASCPLCRRDL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2749 228 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 14 228 IPR044523 -
Pvu3g2749 228 ProSiteProfiles Zinc finger RING-type profile. 186 225 IPR001841 -
Pvu3g2749 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 228 IPR013083 -
Pvu3g2749 228 Pfam Ring finger domain 185 225 IPR001841 -
Pvu3g2749 228 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 14 228 - -
Pvu3g2749 228 SMART ring_2 186 224 IPR001841 -
Pvu3g2749 228 SUPERFAMILY RING/U-box 185 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2749 Pvu-Chr3 49367301 49369442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2749 18 228 C3H Transcription Factor Family AT5G66070 72.430 4.32e-107 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2749 - - gmx:100816939 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1085 2 21186189 21189007 Pvu3g2749 3 49367301 49369442 PCT