Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2748 ATGTCTGCTCATGAGATGTCGCTGGAGTTTATTGCAGGCATTTTCGCAGCAATGGTAGTGGCCTTACTCTACTGGCTCTTCAGGAGAAAGGTCATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGGAAAGGAAGATAAAAGCTTTGAACATGATACAATACCATTAAGGTATTTTGATTTTAAGGAACTGGAGAGAGCAACAGAAAATTTTAGCCAAGATTGCTTGCTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACCTTTGACTTAGAAGGAACACTAGCCATTAAGAGAGCTCGTTCTGAATCATTCTCTAGTGTGGATGAGTTCAGAAATGAAGTTAGGCTCCTTTCAGCTGTAAGGCACAGGAATCTTATTCGTCTGGTTGGATATTGTGAAGAACCAGAACAAGATGGAGCCAAAATACTAGTCTATGAATATGTTCCAAATGGTTCGCTGCTTGAATACATCATGGGAAGCAGAATGAGCTTAACTTGGAGGCTAAGAGTTAAAATAGCAATAGGAGCAGCAAGAGGCATAGCTTATTTGCATGAAGAGGTGAAACCAAGCATAATCCACCGTGACATCAAACCAAGTAACATCCTATTAGGGGAAGGTTTTGAGGCAAAGGTTTCGGATTTTGGGTTAGTAAAATCAGGGCCAACTGGTGATCAGTCACATGTGAGCAGCCAGATTAAAGGGACACCAGGGTACCTTGACCCTGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGTGACGTTTATAGCTTTGGTGTCATACTTTTGCAACTTGTTTCAGCTAGACCTGTGGTGGATTCCACTAAAAAACAAAGTAATCAACATATCATTGACTGGGCAAGGCCAAGCATAAAGAAGGGCAGTGTTGAAGAAATCATAGATGCAAATCTACTATGTCAAAGTGAGCCATGCAATATGGAAGTTATGCTGAAGATGGGGCAACTTGCTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACTCAGGTCTGTCAAGAACTAGAGCAAGCCCTCTACTCAGCTGATAGCTTCAACAGAAATAAACAGTCTTCAAAGGGATTCTTTACACCAATTGGCTTATCCCAGCAATCACCAAAGTCGGAGACTCGGGGATCAGTTGAATCATATGATTGTTCACAGAGCTTTGTTAGTATTGATGGTGTTGGATTTCAGAAATTTCATGTTGATATGGATAGTTTCTCCTTTAAGAGCACAGACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATGGAGAGAATATAA 1305 0.4038 MSAHEMSLEFIAGIFAAMVVALLYWLFRRKVIPFLKQRKTLKGKEDKSFEHDTIPLRYFDFKELERATENFSQDCLLGSGAFGNVYKGTFDLEGTLAIKRARSESFSSVDEFRNEVRLLSAVRHRNLIRLVGYCEEPEQDGAKILVYEYVPNGSLLEYIMGSRMSLTWRLRVKIAIGAARGIAYLHEEVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLVSARPVVDSTKKQSNQHIIDWARPSIKKGSVEEIIDANLLCQSEPCNMEVMLKMGQLALRCVVEEPKHRPTMTQVCQELEQALYSADSFNRNKQSSKGFFTPIGLSQQSPKSETRGSVESYDCSQSFVSIDGVGFQKFHVDMDSFSFKSTDLRCLENNSISIDMERI* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2748 434 SMART serkin_6 71 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2748 434 Pfam Protein kinase domain 74 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2748 434 CDD STKc_IRAK 77 348 - -
Pvu3g2748 434 ProSiteProfiles Protein kinase domain profile. 71 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2748 434 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Pvu3g2748 434 SUPERFAMILY Protein kinase-like (PK-like) 51 347 IPR011009 -
Pvu3g2748 434 Gene3D Phosphorylase Kinase; domain 1 34 149 - -
Pvu3g2748 434 Gene3D Transferase(Phosphotransferase) domain 1 150 368 - -
Pvu3g2748 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Pvu3g2748 434 PANTHER OS01G0750732 PROTEIN 10 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2748 Pvu-Chr3 49359545 49362520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2748 57 393 Receptor kinase-like Gene Family AT1G30570 41.593 1.46e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pvu3g2748 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2748 - - var:108328541 792.341