Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2710 ATGGCGGAAGAGCGATTCACGGGCGTTGTGCAGTGGTTCAACAATGGCAAGGGCTTCGGCTTCATCAAGCCCGACGACGGCGGTGAGGATCTCTTCGTCCACCAGTCTTCCATCAGATCCGACGGCTATCGCACTCTCCTCGAAGGCGATCGCGTAGAGTTCGCTATCGCCACCGGCGATAACGACAAAACAAAGGCCATTGACGTCACCGGCATCGACGGCGCTCCTCTCCAGCCTCGTGCCGCTGCTGGCAATCGCGGTTCTGGCTATGGCTTCGGCCCCAGGAGGAATGGCGCGGGCGCTGGCGGTGCCGCGTGCTACCAGTGTGGCGATTTCGGTCACCTCGCCAGGGACTGCAACCGGAGCACCAATTCCGGCGGCGGAGGTGGTGGTGGGTGTTTCGTTTGCGGCGGGTTCGGTCACCTCGCAAGGGATTGCGCGCGCGGAGGAAACATCGGCGGTGGAGGCGGCGGAAGCGGCTCTTGCTTTAGGTGTGGAGGATTTGGACACATGGCGAGGGATTGCGCCACGGCGAAAAGCGTCGGTGTTGGTGGTGGTGGTAGTGGTGGCGGTTGTTTTCGGTGTGGGGAGGTTGGTCATTTGGCTAGGGATTGCGGCATTGAAGGAGGAAGGTTTGGCGGTGGTAACAGTGGTGGCGGCGGCGGCGGTGCTGGGAAGAGCACCTGCTTTAATTGCGGGAAGCCTGGCCATTTTGCGAGGGAGTGTGTGGAGGCTTCCGGGTGA 744 0.6196 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAIDVTGIDGAPLQPRAAAGNRGSGYGFGPRRNGAGAGGAACYQCGDFGHLARDCNRSTNSGGGGGGGCFVCGGFGHLARDCARGGNIGGGGGGSGSCFRCGGFGHMARDCATAKSVGVGGGGSGGGCFRCGEVGHLARDCGIEGGRFGGGNSGGGGGGAGKSTCFNCGKPGHFARECVEASG* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2710 247 Gene3D - 187 211 - -
Pvu3g2710 247 Gene3D - 156 182 - -
Pvu3g2710 247 Gene3D - 222 247 - -
Pvu3g2710 247 Gene3D - 102 155 - -
Pvu3g2710 247 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 ProSiteProfiles Zinc finger CCHC-type profile. 192 205 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Pvu3g2710 247 ProSiteProfiles Zinc finger CCHC-type profile. 229 242 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 PANTHER COLD SHOCK PROTEIN 2 1 91 - -
Pvu3g2710 247 PANTHER COLD SHOCK PROTEIN 2 123 246 - -
Pvu3g2710 247 PANTHER COLD SHOCK PROTEIN 2 98 125 - -
Pvu3g2710 247 Gene3D - 1 82 IPR012340 -
Pvu3g2710 247 SMART c2hcfinal6 191 207 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 SMART c2hcfinal6 228 244 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Pvu3g2710 247 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Pvu3g2710 247 Pfam Zinc knuckle 191 205 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 Pfam Zinc knuckle 228 242 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 Pfam Zinc knuckle 161 176 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 PANTHER COLD SHOCK DOMAIN PROTEIN 2 98 125 - -
Pvu3g2710 247 PANTHER COLD SHOCK DOMAIN PROTEIN 2 123 246 - -
Pvu3g2710 247 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 91 - -
Pvu3g2710 247 SUPERFAMILY Retrovirus zinc finger-like domains 99 148 IPR036875 GO:0003676|GO:0008270
Pvu3g2710 247 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Pvu3g2710 247 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Pvu3g2710 247 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Pvu3g2710 247 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Pvu3g2710 247 SUPERFAMILY Retrovirus zinc finger-like domains 213 243 IPR036875 GO:0003676|GO:0008270
Pvu3g2710 247 SUPERFAMILY Retrovirus zinc finger-like domains 155 206 IPR036875 GO:0003676|GO:0008270
Pvu3g2710 247 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Pvu3g2710 247 ProSiteProfiles Zinc finger CCHC-type profile. 162 175 IPR001878 GO:0003676|GO:0008270
Pvu3g2710 247 SMART csp_8 7 72 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2710 Pvu-Chr3 49081089 49082278 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pvu3g2710 CSD 1e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2710 K09250 - gmx:100806783 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2710 3 49081089 49082278 Pvu3g2710 3 49081089 49082278 ECH