Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2683 ATGAGAACACGAAATGCTGATCCCGCTTCTAAATCCGCAATCCCCAAGAAGACGCCACCACCGAGGAAATCCCCTGCGGCGAAGCGCACCGTCGCCACCAAAACCAGAAGTACAAAGAAGAAAGAGGTTTCACCCGCCCCCGATTCCAACACCGATCAACCTCCTCTGGAACAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTGTGAAAAGGAAGGCTCCAGGGAGACCTAGACTTAAAGCAATTGATACTCCGAATTTGGAAGAACAACGTGAGGCAGTAGCTGATGAAACTCCAATTGAAGACAAAACCGAGGCTGCAGAGAAAGTGAAAGATGTTGGAGTTGTTGATGCAGATAGTATCGAGGGTGAGAAAGAGGGGGAACAAGGTGTTGGGTTTTCTGAAGAGAAGTCGATGGAAGTGGATGAACCTGTTGTTGAAAAGGGAAATGACATGATGGGAGTTGAAGTAAATGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGACTAGGGCGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGGTGAAAAGGAGGGTGAGAAAGGAAAGGAAGTGTTCAAAAATCAAGAAGGGGACAAAGGAAAGGATAAGTTGAAAGAACAGGAAGTAGATGAAGGGAAGGAAGAGGTGAAAGTGCATGAAGGGGACAAAGGAAAGGAAGAGTTGAAAGAACTGGAAGGAGACAACGGAATGGGAGAGTTGAAAGAAGTCGATGGAGAGAAAGAAAAGGAAGAGATGAAAGAACTCGATGGAGAGAAAGAAAAGGAAGAGTTGAAAGAACTCGATGGAGTGAAAGGTAAGGAAGAGTTGAAAGAACATGAACCAGAGAAAGGTAAGGAGGAATTGATAGAATGTGAAGGAGAGAAAGGTAAAGAAGAGATGATAGAACAAGTAGGACATAAAGGAAAGGTTGAATTGAAAGAACAGGAAGTAGACAAAGGAAAGTTGAAAGAGCAGGATCCAGAGAAAGCAGAGGAAGAGGAAACAAACCTTTTTGGACACGAAGAGAACACTGTTCCTCTTGGTCTAGAAGTGAAAGCCCAGATGCAAACAGAAGATGCTAATCCCATTAAAGATGGTGGTGAAGGACCAAAGAGTGGTGAAAAGTTAGATCTTCGAGAACAAGGGGGGAGGGTGGAGCTTTCTGAAGAGGATCCGGAGGAAGATCCAGAAGAACCTCTAGAAGAAATTGAGGCGTTGGAGCAGGAGCATAGGGAACTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATTTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGCACTGCACCTAGCGAGGATAATGACACATTATTCTTGGGAAACATTTGCAATACTTGGACAAAAGAAGCTATCAAACAGAAGCTGAAGGACTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGCTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCACGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATACGTGAACCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGTTGTTTAAATCTTATGGTGAAATTGTGAGAATCGTGTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTCTTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAGTCAGAAATGGGTGATGTGGCATCAAAGATAAAAGTGAGAGCTAGACTCTCAAACCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCAGCCTTTTCAAGACCAGGGAGGGGGTTTGGACGAGGAAGACAGCCCTTCAATAACAGGGGAAATTTCAACAGGGATAGGAGTTTCTATCACAGTGGACACAATCAAATTGGAAGAATGGGTTTTCGGGATGACTTTGATTTTAATATGCATCCGGATTTCCGTCAGAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGTTGGTAGCCGAGGTGCTTCATTTGCTGGACCATCTAGACCTTATCACGATAGAGCATGGTATGGTATGCCTGATGGAGGCCCTAGTGAGCCTATTCCTCCAAGGAGGACCTACTCCCCTGGTGGACAATTTGACATGCCTTTTGTGGGAAGACATTTTGATGATCCATATCTATACGATGACAACATGCATGGAATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCTCCTATATTTCATGGAACTCATCACAATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCGCCGGACTATTATGGTTCCGATTACGGTAGAGGTTCGTATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTAG 2790 0.4423 MRTRNADPASKSAIPKKTPPPRKSPAAKRTVATKTRSTKKKEVSPAPDSNTDQPPLEQKPVASGSSTKTVKRKAPGRPRLKAIDTPNLEEQREAVADETPIEDKTEAAEKVKDVGVVDADSIEGEKEGEQGVGFSEEKSMEVDEPVVEKGNDMMGVEVNASQDVSVSFQRLGRPIMDLNISADNEDCTGEKEGEKGKEVFKNQEGDKGKDKLKEQEVDEGKEEVKVHEGDKGKEELKELEGDNGMGELKEVDGEKEKEEMKELDGEKEKEELKELDGVKGKEELKEHEPEKGKEELIECEGEKGKEEMIEQVGHKGKVELKEQEVDKGKLKEQDPEKAEEEETNLFGHEENTVPLGLEVKAQMQTEDANPIKDGGEGPKSGEKLDLREQGGRVELSEEDPEEDPEEPLEEIEALEQEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFLTHEAAVACVDGVNKSEMGDVASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPGRGFGRGRQPFNNRGNFNRDRSFYHSGHNQIGRMGFRDDFDFNMHPDFRQRQFGPQGAVRGGHYVGSRGASFAGPSRPYHDRAWYGMPDGGPSEPIPPRRTYSPGGQFDMPFVGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTHHNDSFGAGSRQYPPDYYGSDYGRGSYSSYYGGDGSHGHGYYY* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2683 929 MobiDBLite consensus disorder prediction 182 408 - -
Pvu3g2683 929 MobiDBLite consensus disorder prediction 47 70 - -
Pvu3g2683 929 Gene3D - 601 755 IPR012677 -
Pvu3g2683 929 Coils Coil 411 431 - -
Pvu3g2683 929 MobiDBLite consensus disorder prediction 184 347 - -
Pvu3g2683 929 MobiDBLite consensus disorder prediction 372 394 - -
Pvu3g2683 929 SUPERFAMILY RNA-binding domain, RBD 604 710 IPR035979 GO:0003676
Pvu3g2683 929 CDD RRM_SF 614 688 - -
Pvu3g2683 929 Gene3D - 513 598 IPR012677 -
Pvu3g2683 929 MobiDBLite consensus disorder prediction 720 741 - -
Pvu3g2683 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 584 IPR000504 GO:0003723
Pvu3g2683 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 436 504 IPR000504 GO:0003723
Pvu3g2683 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 614 679 IPR000504 GO:0003723
Pvu3g2683 929 CDD RRM_SF 516 579 - -
Pvu3g2683 929 MobiDBLite consensus disorder prediction 1 142 - -
Pvu3g2683 929 CDD RRM_SF 436 504 - -
Pvu3g2683 929 Coils Coil 253 273 - -
Pvu3g2683 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 612 692 IPR000504 GO:0003723
Pvu3g2683 929 SUPERFAMILY RNA-binding domain, RBD 435 579 IPR035979 GO:0003676
Pvu3g2683 929 SMART rrm1_1 613 686 IPR000504 GO:0003723
Pvu3g2683 929 SMART rrm1_1 515 592 IPR000504 GO:0003723
Pvu3g2683 929 SMART rrm1_1 435 508 IPR000504 GO:0003723
Pvu3g2683 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 434 512 IPR000504 GO:0003723
Pvu3g2683 929 MobiDBLite consensus disorder prediction 77 142 - -
Pvu3g2683 929 Gene3D - 362 512 IPR012677 -
Pvu3g2683 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 514 599 IPR000504 GO:0003723
Pvu3g2683 929 PANTHER NUCLEOLIN-LIKE ISOFORM X1 318 922 - -
Pvu3g2683 929 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 318 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2683 Pvu-Chr3 48859578 48869716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2683 435 680 Eukaryotic Initiation Factors Gene Family AT2G23350 24.111 6.93e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2683 - - gmx:100819035 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2683 3 48859578 48869716 Pvu3g2683 3 48859578 48869716 ECH