Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2665 ATGGTGATGGTGGTGGTGGTGGTGGTGGTGGAGAGGGTAGAGAGAGTTGAGAGTGATAAAGCAGAAGGAAAAGTAAGATTAGGGAGTTCTAAGGTTTATTTATTATTTATTATTTATTGTTGGGGCAAAGAAAGAGGCACATTTCAGCCCTCATTCAATGATGCTTTAACCAACTCACCATCCTCCACCCTCTCTCTCTTTCTCTTTCTCTTTCAATTTCATCCTTCTTCTCTTCCCTCTCTTCTCTCTCAGTTTAAGGTTGCAATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGGAAAGACATGTCCCTCAAACTCAGCCCCCAAGCGTTCCCGGAGGACCTTAACATGCAAAACGTCACCGCTTGCGACGACTTCTTCGTCGACGACCTCCTCGACTTTTCGCTCCTCGAAAACGAAGAACCCGACCAACACAAACACAACCACCACTCAACCTCTGTCTCCCCCCACAACAGCAACCACGACAGTTACAATTGCAACCCCTCCTTTAACGACAATTTCAATACCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGATTCTTTCTCCAAATATTCTCTTTCTTTCCCCGCAACCGTCTCACAGAGCCTCGCTGAGAAACCGCCGGAACCGGGAAACGCCGGTTTCACTTTTAAAACCCTCGTTCCGGCAAAGCCTAGAAGCAAGCGAACCAGAACCGGTGTTCGGGTTTGGCCACTCAGGTCACCCTCGTCTTTCACCGACACGTCGTCTCCCTCCAGCCCTTTGTTAATTTGCGCCGCTGCGTCTAAAGACCACCACCCGGAGGATAAGAGGGCAAAGAAACGGGCCGCGCCGGACGGTGGCGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACTCCTCAGTGGCGAACTGGGCCGCTCGGGGCAAAGACCTTGTGCAATGCGTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCGTGTAGTCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTCTGGAGATGCGGCAGAAGAAGGAGGCGGAGCCTGGACCGGACACCGGTTCGCCACCGTCGGTTCCCGGTTTTTGA 1146 0.5201 MVMVVVVVVVERVERVESDKAEGKVRLGSSKVYLLFIIYCWGKERGTFQPSFNDALTNSPSSTLSLFLFLFQFHPSSLPSLLSQFKVAMECLEAVLKSSFRKDMSLKLSPQAFPEDLNMQNVTACDDFFVDDLLDFSLLENEEPDQHKHNHHSTSVSPHNSNHDSYNCNPSFNDNFNTELTLPAEEVADLEWVSHFIEDSFSKYSLSFPATVSQSLAEKPPEPGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFTDTSSPSSPLLICAAASKDHHPEDKRAKKRAAPDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAEPGPDTGSPPSVPGF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2665 381 Gene3D - 292 366 IPR013088 GO:0006355|GO:0008270
Pvu3g2665 381 PANTHER GATA TRANSCRIPTION FACTOR 89 367 - -
Pvu3g2665 381 MobiDBLite consensus disorder prediction 359 381 - -
Pvu3g2665 381 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 291 355 - -
Pvu3g2665 381 Pfam GATA zinc finger 299 333 IPR000679 GO:0006355|GO:0043565
Pvu3g2665 381 MobiDBLite consensus disorder prediction 275 294 - -
Pvu3g2665 381 SMART GATA_3 293 347 IPR000679 GO:0006355|GO:0043565
Pvu3g2665 381 ProSitePatterns GATA-type zinc finger domain. 299 324 IPR000679 GO:0006355|GO:0043565
Pvu3g2665 381 CDD ZnF_GATA 298 346 IPR000679 GO:0006355|GO:0043565
Pvu3g2665 381 PANTHER GATA TRANSCRIPTION FACTOR 89 367 - -
Pvu3g2665 381 ProSiteProfiles GATA-type zinc finger domain profile. 293 329 IPR000679 GO:0006355|GO:0043565
Pvu3g2665 381 MobiDBLite consensus disorder prediction 144 164 - -
Pvu3g2665 381 MobiDBLite consensus disorder prediction 275 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2665 Pvu-Chr3 48707219 48708950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2665 93 381 C2C2-Gata Transcription Factor Family AT5G66320 44.412 1.10e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu3g2665 GATA 5.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2665 - - pvu:PHAVU_003G258900g 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2665 3 48707219 48708950 Pvu2g1157 2 22846653 22848414 ECH
Pvu3g2665 3 48707219 48708950 Pvu3g2665 3 48707219 48708950 ECH
Pvu2g1157 2 22846653 22848414 Pvu3g2665 3 48707219 48708950 PCT