Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2657 ATGGCGAATTTGTTCTCATTAAGCGGAGGGAGAGGCAGTAACAACAACCAGCAAGACACCACTACCAACAACGAGATTCCTGCAGCCGAGACCCTATTCTGGTACGCCAAAAACGACGACGTTTCGTCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTCATGCCCCCGCATGTGCGCCCCCTCCTGCAGCGAGATCTTTACTCGTCTGGTGTGGGACCCAGCCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCGATGCGTGCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCCAAAAAAGATTGTCCTCACATGCGGTGCAGAACGTGCTGCAAGAGCCGAGGCTACGATTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGTGAGCGTCAACAACAGCTCGCTGTGTTGCAAGAACAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGAGACCCAACTGCTTGCACTCGTTTGCCCTCGTCAGAAGGGTTAGAAGAAGGGCATTTTCCTTCACTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATGTGTTCAAAGGAATCCTTTATGACTATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAGTAATAATTACATGGCTGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCTCTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCAGCTCCAGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 927 0.52 MANLFSLSGGRGSNNNQQDTTTNNEIPAAETLFWYAKNDDVSSYRGFELWNQQQEQHVMPPHVRPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLAVLQEQQQQQRDLSKRPRDPTACTRLPSSEGLEEGHFPSLVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPENSNNNNSNNSNNYMAGETSAGVAGAQPLNLTASGVVSSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2657 308 Pfam Domain of unknown function (DUF702) 102 238 - -
Pvu3g2657 308 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 308 IPR007818 GO:0003700|GO:0006355
Pvu3g2657 308 MobiDBLite consensus disorder prediction 1 22 - -
Pvu3g2657 308 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 189 237 IPR006511 -
Pvu3g2657 308 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 308 - -
Pvu3g2657 308 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Pvu3g2657 308 MobiDBLite consensus disorder prediction 156 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2657 Pvu-Chr3 48595588 48598752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2657 1 308 C2H2 Transcription Factor Family AT3G51060 44.624 2.52e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pvu3g2657 DUF702 7.3e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2657 - - gmx:100789129 437.187