Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2647 ATGGAATTTGCTAGTTTCCATCTTCAGCATCAGCTTCAAGAAGAATCTGCTCAGTGTATAACTTCAGCAACCCCACCACCTGACTCTAAACCTTCCATTACCACTAGTCAATCATGGATCCCAAGCAACATGTACAATGGTTGTAACAGTGGCTTTCTAACTGAGAGCTTTACAAATTCAAGAGAACTACAGCACAAGCACGCCATGACTGATTCACTTAGAATTTCAACAAGGCAAGCCTTTGGTTTCCACAATGGAAAAAGCTTCTCTCAACAGCCAGTTAGTGATCTCTTTCCAGCAAGAATGAGAGGTGAAATGATCAACACCTCCATGAAGGCTGTGGAGGAATCATGTTCACTAATCCCAGTTCATGAACCACGATATCCTCCTAGTTTCTTATCCAGTCTTGGTGTAACTGGTCCAGAGTTTGTTCCTGCGGAGAATGTCTTTCATAATAACAAGTCTATTGAGGGAAGGACACAAAGCAAGAGATATAACAACTTTGGCGATGCTAGCTTAATTTCCAATTTACCAACCCTAGATATGACCTCTTCCTTGGTTTCATGTTCTTTGGGTTTAAATCCTAAAATGTTTGATCTGCATACAAGCTATAGCGAGAGTTGTGAAATCCAACCTTGCTATGATACATTTGGTCTAAACGAGAGCATAGCTTTGTGCCACAGCGACATGCATGGCAGCGATAATAGTCCATCAAATAGCTCAAAAATTTCATCGTTTATAAGTGAAGTTGCAACAACCAAAAGGCCTAGCAATTGCTCTCTACCAAAAGAATCTGAAGCCAAAGCCAAGAAGTCAAGGCCATCATCATGCCCTCCCCTGAAGATAAGAAAGGAAAAATTGGGGGATAGGATTCAAACTCTTCAAAGATTAGTGGCACCTTTTGGGAAGACCAGTACAGCCTCTGTCTTAAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCACTCCTTACATGAAATCCACGCAAAGCAATAGAATGATGCAGCTGGGTAGCAAAGAACTGAAGACAGACCTAAGAAGCAGAGGCTTGTGTCTTGTGCCCTTTTCTTACGCATCATTTATTCATCGTTGTGTTTAG 1119 0.4164 MEFASFHLQHQLQEESAQCITSATPPPDSKPSITTSQSWIPSNMYNGCNSGFLTESFTNSRELQHKHAMTDSLRISTRQAFGFHNGKSFSQQPVSDLFPARMRGEMINTSMKAVEESCSLIPVHEPRYPPSFLSSLGVTGPEFVPAENVFHNNKSIEGRTQSKRYNNFGDASLISNLPTLDMTSSLVSCSLGLNPKMFDLHTSYSESCEIQPCYDTFGLNESIALCHSDMHGSDNSPSNSSKISSFISEVATTKRPSNCSLPKESEAKAKKSRPSSCPPLKIRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSTPYMKSTQSNRMMQLGSKELKTDLRSRGLCLVPFSYASFIHRCV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2647 372 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 368 - -
Pvu3g2647 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Pvu3g2647 372 MobiDBLite consensus disorder prediction 255 282 - -
Pvu3g2647 372 MobiDBLite consensus disorder prediction 15 35 - -
Pvu3g2647 372 Gene3D - 281 345 IPR036638 GO:0046983
Pvu3g2647 372 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 368 - -
Pvu3g2647 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 335 IPR036638 GO:0046983
Pvu3g2647 372 CDD bHLH_AtbHLH_like 283 328 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2647 Pvu-Chr3 48487019 48491229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2647 236 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 50.350 2.79e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2647 - - var:108339505 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2647 3 48487019 48491229 Pvu3g2647 3 48487019 48491229 ECH