Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2624 ATGTTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAACAGGAAGCACGTCTAAGCGGGGTGCAGAAAGCAAGCTTCGACTCAGTCGTACAAAGTCACATATTGCTCCAGATGTTATTGCAACTACATTTGAATTTATTCAACAGGGACAATGGGCAAATCTTCCAGAAGAATTGCTTTTTGACATAATCCAGAGGGTTGAAGAGAGTGAAACATCTTGGCCTGCCCGTGCTGTTGTTGTCTTCTGTGCTTCTGTATGTAAATCATGGAGGTCTATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCCGGTCCACGTGATTCTCCAATACAGTGCTTTATCAGGAGGAGCAAAGAAAGTTCTACATATCTGTTGTACTTTGGCCTGGTTCCATCAGAGAATGACAATAACAAGTTGTTATTAGCGGCCAAAAGGATAAGAAGGGCAACAGGCACTGATTTTGTCATATCCTTGGCCACAGATGATTTTTCTCGAGCCAGCAATAAATATGTTGGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACCATATATGACAGTCAACCTCCCCGTGATGCTGCAATTCAACCAAATTGTCAATCTAATAGGAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCTTGTAGCTACCTTGTTAGCACAGTTTCCTACGAGCTGAATGTCCTTTGCACTAGAGGGCCAAGAAGAATGCATTGCGTCATGAACTCTATACCCGTCTCAGCAATTCAGGAAGGGGGCAACGCCCCAACTCCAACTTCTTTCCCTCAAATATTTGATGAACCTTTTTCTCCATCACCAGCAGCGAAAGAAAAAGTTCCAGTCCCCGATTTAAACTCTGCAAGCTTATCAGAGCCACCAATATCGAGCCAAGTCTCAACTGAGCAATTAGCACTGAAAAACAAGGCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAAGGTCGTGTGTCTGTGGCTTCTGTTAAGAACTTTCAGCTTGTAGCTGCTGTTGATCCGTCACATAACATTTCTGCTGAGGAGCAAGACAAGGTAATCCTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCGTTATCCACTCTCTACCTTTCAAGCGTTTGCCATCTGCTTGAGTAGCTTTGACACTAAACCAGCCTGCGAATGA 1242 0.4348 MLRSIVRELKEMRDGTGSTSKRGAESKLRLSRTKSHIAPDVIATTFEFIQQGQWANLPEELLFDIIQRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRSKESSTYLLYFGLVPSENDNNKLLLAAKRIRRATGTDFVISLATDDFSRASNKYVGKLRSNFLGTKFTIYDSQPPRDAAIQPNCQSNRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPVSAIQEGGNAPTPTSFPQIFDEPFSPSPAAKEKVPVPDLNSASLSEPPISSQVSTEQLALKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQDKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2624 413 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pvu3g2624 413 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pvu3g2624 413 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Pvu3g2624 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Pvu3g2624 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Pvu3g2624 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Pvu3g2624 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Pvu3g2624 413 Pfam Tub family 115 408 IPR000007 -
Pvu3g2624 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Pvu3g2624 413 SUPERFAMILY F-box domain 50 97 IPR036047 GO:0005515
Pvu3g2624 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 413 - -
Pvu3g2624 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Pvu3g2624 413 Pfam F-box domain 54 101 IPR001810 GO:0005515
Pvu3g2624 413 Gene3D Tubby Protein; Chain A 112 413 IPR025659 -
Pvu3g2624 413 Gene3D - 48 100 - -
Pvu3g2624 413 PANTHER TUBBY-RELATED 2 413 - -
Pvu3g2624 413 SUPERFAMILY Tubby C-terminal domain-like 103 413 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2624 Pvu-Chr3 48269501 48277609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2624 2 413 TUB Transcription Factor Family AT2G18280 62.110 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu3g2624 Tub 3.6e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2624 K19600 - gmx:100805380 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2624 3 48269501 48277609 Pvu3g2624 3 48269501 48277609 ECH
Pvu3g2624 3 48269501 48277609 Pvu2g0323 2 3241253 3244349 ECH
Pvu2g0323 2 3241253 3244349 Pvu3g2624 3 48269501 48277609 PCT