Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2621 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAATCCTTCCTCTTTTAAGGTGCATCGTGCAATGTGCACGGAACTCAGGAAATTAGTTGCTAGAATCTTGCGGATAATTCCACGTATAGAAGAAGCACGTCCTTGCGGAATGCAGGCTCTGTGTTTGCTCAACAGTGCAATTGACAAAGCCGCACAACTACTACTATACTGCTCTGAATCTAGTAAACTCTACCTGGCAATGACAGGGGATTCCATACTCTCAAAATGCCAGAAGGCAAGAAAATCGATAGTAAAAAACTTAGTCCAGATTCTGAATATGGTTCCGGTGATGTTGGCTGCAGAGATTTCTCTACTAATTGGTGATCTTGAGTGTGTTACATTTGGCCTCAACTCAGCGGAAGAAGCAGCTGGGAAGGTTTTGAAACAATTGCTCCAGCAAGATTCTTCAACATCAGATAATGATTCAATGGAAGAATCTGAAATAAAACATTTTCAGTTTGTAGCAGCAAGACTTAGTATTACATCCTCATCGGCCATCTTAATAGAGAAACGATCGATTCAGAAGTTGCTAAAACAAGTCAGACCAAATAAACAGCAAAAAGAGATTGTCTTGAAAAATCTTTTGTATCTCCTTCTAAAGCACAAAAAATCAATCACCGGAGAACAAATTGAGGTCTATTTCCAAAGTGAAGGACCAATCACAACTGAGAACTCAGTTCACGAGTCTCAAAGCATCCTTCCTGTCAAGTCAGGCCCATACTTGAACCATGATCAATATAGGACTCAGGCCAATGAGTTGGGCAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACTATATGCCCGAAAACAAAAAAGAAACTGGAACATATGGCATTGACTCCAAATGTTGTCTTCAAGGACCTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCAAATAGACAAGTGCAACATTTGCATTCATGGGAAGCTTCCTTCAATTCCATTAAGAGTTTTGGAAGTTCTTTGTATGATTTAAACTTCCAAATGGATCTTAGTAACTTGTCACTTGGATCTTTAGAGACCAGTTATAATTCAGATTCCTTTCATGCTAAGGCCAATCATGGCTTAGATTTGATATTGAACAAGACCGGTGCCAATTCTCCCAGGCATCAATCTCATGCAGGGATTCATGATGTTGTTCTGATGCCCTTGTCTAAACTCCATGAACGTCAATGGAAATCTCAATGCCAACTCATTGAAGATATGAAAATAGATTTCAAATGCAATAACCATACTCTTTGCTCTGTGCCATCTGAGAATTTCATTGACCCACTCACGAGATTTCTGAGCACTGCCTGTGAGAGACATGATGTAAAAGCTCTGAGATCTGGAACTAAATTGCTGTTGGAATTTATGAAGTGCTGCCGCAATGGTATGACCAATTTAAGTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGACACAGACGTGATTGGTGAAGCTCTTACCATAATGGGAGAGTTGGCAGGAAACTGGTGTGAGAAAGCTAACATTGCTGCTTCCACTGTACTCACTTCTATTTCAAAGATCCTTGATTTGGGTAGCAAAGAGTTCCAAGGAAAAGCTATTAAAATAATGCTTAATTTTTCATCCAATAGTCAAATTTGTCACTACATGGTATCTCTCGGATGCATCCCAAAATTACTGCCATTTTTTGAAGATAAAACCCTTTCAAGAGACTGTATACATATTTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTTCTGTGGTTGAAACAAAAGGATGCATATATTCTGTTGTTGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACCGGCACTTGATATTCTACTCTCTTTATGCTCTCAACGTGTGGAATACTGTCAGATGATTATGGATGAGGGGATTATTCCTTCTCTTGTGGACATCTCCAATTCAGGAAGTGATATGGCAAAGGCTTTTGCACTTGAACTACTACGTCTTTTGAGGACGGAGTTTGAGGATGAAGACTCCTATGAGCCAAATTTCAATGCCTCTCAAGAATCTACCAATCTCTATCAAGAAAAGAAATCACCAAAGAAACCTTCCATTTTGAAGAGACTATCAATCTTCTCAAAATCCAGTTCAGTTGCACCAAAAAACAAGAGATGA 2274 0.3936 MGTDGSELVETLPNPSSFKVHRAMCTELRKLVARILRIIPRIEEARPCGMQALCLLNSAIDKAAQLLLYCSESSKLYLAMTGDSILSKCQKARKSIVKNLVQILNMVPVMLAAEISLLIGDLECVTFGLNSAEEAAGKVLKQLLQQDSSTSDNDSMEESEIKHFQFVAARLSITSSSAILIEKRSIQKLLKQVRPNKQQKEIVLKNLLYLLLKHKKSITGEQIEVYFQSEGPITTENSVHESQSILPVKSGPYLNHDQYRTQANELGRLTPPEEYTCPISLRLMYDPVVIASGETYERMWIQKWFDEGNTICPKTKKKLEHMALTPNVVFKDLILKWCETNGVSIPDPNRQVQHLHSWEASFNSIKSFGSSLYDLNFQMDLSNLSLGSLETSYNSDSFHAKANHGLDLILNKTGANSPRHQSHAGIHDVVLMPLSKLHERQWKSQCQLIEDMKIDFKCNNHTLCSVPSENFIDPLTRFLSTACERHDVKALRSGTKLLLEFMKCCRNGMTNLSEDTCIMLASLLDTDVIGEALTIMGELAGNWCEKANIAASTVLTSISKILDLGSKEFQGKAIKIMLNFSSNSQICHYMVSLGCIPKLLPFFEDKTLSRDCIHILKNLCDTEEGRVSVVETKGCIYSVVEILGTGSDEEKEPALDILLSLCSQRVEYCQMIMDEGIIPSLVDISNSGSDMAKAFALELLRLLRTEFEDEDSYEPNFNASQESTNLYQEKKSPKKPSILKRLSIFSKSSSVAPKNKR* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2621 757 SUPERFAMILY RING/U-box 263 347 - -
Pvu3g2621 757 MobiDBLite consensus disorder prediction 713 735 - -
Pvu3g2621 757 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Pvu3g2621 757 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 750 - -
Pvu3g2621 757 PANTHER U BOX DOMAIN-CONTAINING 2 750 - -
Pvu3g2621 757 MobiDBLite consensus disorder prediction 714 731 - -
Pvu3g2621 757 SMART arm_5 583 621 IPR000225 GO:0005515
Pvu3g2621 757 SMART arm_5 622 663 IPR000225 GO:0005515
Pvu3g2621 757 SMART arm_5 665 705 IPR000225 GO:0005515
Pvu3g2621 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Pvu3g2621 757 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Pvu3g2621 757 CDD RING-Ubox_PUB 277 317 IPR045210 -
Pvu3g2621 757 SUPERFAMILY ARM repeat 441 706 IPR016024 -
Pvu3g2621 757 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Pvu3g2621 757 Gene3D - 455 714 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2621 Pvu-Chr3 48256664 48262181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2621 15 703 U-box Gene Family AT4G36550 36.068 5.20e-126 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2621 - - gmx:100798951 1188.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2621 3 48256664 48262181 Pvu3g2621 3 48256664 48262181 ECH
Pvu3g2621 3 48256664 48262181 Pvu2g0322 2 3234986 3240388 ECH
Pvu2g0322 2 3234986 3240388 Pvu3g2621 3 48256664 48262181 PCT