Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2617 ATGGACATGAGAGAGCAAGATAAGGTAATAGAGATGCCTGGCACTTTGGGTTATAACCTCCCCAATACAAATTCATCTTCTTCCAAGCTATCGTCACTAATAGGGGAAAGAAGTGACCAACCTCCTCAGTCTCACACATTGGTTTTCAGTGATCCACCCCAAACAAATTCACATCACCACCGTCGTCTCAATCCCCCTAATTCTCTTCCACCAAACCCTCTTCAACTTCCTCACCCTCACAGACCCAGAAGAGATCTAGATCCAACTGCTATTTCTCCTCCTATCGTAACCACCTCAAGAACTCAACCACACTCAACCGGAACTTTCACAGCAACAGTCAGATACCGAGAATGTCTGAAGAATCATGCTGCAATCATGGGGGGTCATGTCACAGATGGGTGTGGAGAGTTTATGCCAAGTGGAGAAGAAGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCCGAAGGCGAGTCATCACAACATGTTCTCAACTACCACCTCACTTACCCCAACAAAACCAATAGAAACATTGTTATTCATTCTCCGCAATCTCATCTTCAGTTACCTACACACCACCTTCACGGGGTGGTGGCCACCCCTTCAGGTGGGTCGGTTCAGCCCGCGGTGCTGGGCTTTGGGGGGACCCCAACTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCGATGAGGCAGGGCAATTGTTATCAGTGCAGCCACCCCTGTCATCGTCCAAGAAGAGGTTCAGGACCAAGTTCTCACAGCAACAAAAGGATCAGATGATGGAGTTTGCTGATAAACTTGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGCTCTCAGGTTGGTGTAAAAAGACAGATTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 966 0.4741 MDMREQDKVIEMPGTLGYNLPNTNSSSSKLSSLIGERSDQPPQSHTLVFSDPPQTNSHHHRRLNPPNSLPPNPLQLPHPHRPRRDLDPTAISPPIVTTSRTQPHSTGTFTATVRYRECLKNHAAIMGGHVTDGCGEFMPSGEEGTPESFKCAACECHRNFHRKEPEGESSQHVLNYHLTYPNKTNRNIVIHSPQSHLQLPTHHLHGVVATPSGGSVQPAVLGFGGTPTESSSEDLNMFQTDEAGQLLSVQPPLSSSKKRFRTKFSQQQKDQMMEFADKLGWKIQKQDEQELHQFCSQVGVKRQIFKVWMHNSKQAMKKKQM* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2617 321 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 257 314 IPR006455 -
Pvu3g2617 321 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 115 164 IPR006456 -
Pvu3g2617 321 MobiDBLite consensus disorder prediction 17 63 - -
Pvu3g2617 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 319 - -
Pvu3g2617 321 MobiDBLite consensus disorder prediction 1 106 - -
Pvu3g2617 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 59 319 - -
Pvu3g2617 321 MobiDBLite consensus disorder prediction 92 106 - -
Pvu3g2617 321 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 114 164 IPR006456 -
Pvu3g2617 321 Gene3D - 247 318 - -
Pvu3g2617 321 SUPERFAMILY Homeodomain-like 251 318 IPR009057 -
Pvu3g2617 321 Pfam ZF-HD protein dimerisation region 113 165 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2617 Pvu-Chr3 48220277 48221900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2617 112 318 ZF-HD Transcription Factor Family AT1G75240 48.908 1.56e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu3g2617 ZF-HD_dimer 4.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2617 - - ccaj:109810490 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2617 3 48220277 48221900 Pvu3g2617 3 48220277 48221900 ECH
Pvu3g2617 3 48220277 48221900 Pvu2g0318 2 3203515 3206218 ECH
Pvu2g0318 2 3203515 3206218 Pvu3g2617 3 48220277 48221900 PCT