Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2613 ATGATGCATCGTTGTTGCGGGAACTCCCAGGGTCACGTGATGGGCACCTGCACATGCAGCATGTTTCACAGTGAAACAAACTCCTACTCGATGCTCTTTTCTATGCCCAACACCCACGGTCCCTATGATGATTACGAACACGACATGTATTCCTCCTACACGCCCTCTCCTTCTTCCGTGGACTGCACGCTCTCCCTCGGAACCCCTTCCACGCGTTTCACTGAAGGCGAGGAGCTACGAAACCGTCACGAACCTCGCTCTTCCGTCACCAACTTCTGCTGGGACTTGCTGCAATCCAAACACACCACGCAATCTCAAACCAATAAATCCACCAGAGCAACCAATAATGGCGGCTCCAACAACGACCCTCTCCTCGCTCGTCGTTGCGCCAACTGTGATACCACTTCCACTCCCCTCTGGAGAAACGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGCGGGATCAGATATAAAAAGGAAGAGAGAAGGGCAAGCGCTGCAGCCGCCACGTCTGCGACAGTTCCCAGCAGCGTAATGGAATCGTCGCGCTCTTACGGCAACCAAAGCAGTTCGTGGTACGCACACTCGCAGATGGGTAACGAGTTACGTTTCATGGAGGATTCTGACGATAGAGATTCGGACAATGGCATTCCGTTCTTCTCATGGAACCTTAACGTTCCAGACCGAACGAGCCTCGTGCACGACTTCACGAGATGA 720 0.5319 MMHRCCGNSQGHVMGTCTCSMFHSETNSYSMLFSMPNTHGPYDDYEHDMYSSYTPSPSSVDCTLSLGTPSTRFTEGEELRNRHEPRSSVTNFCWDLLQSKHTTQSQTNKSTRATNNGGSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAATSATVPSSVMESSRSYGNQSSSWYAHSQMGNELRFMEDSDDRDSDNGIPFFSWNLNVPDRTSLVHDFTR* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2613 239 MobiDBLite consensus disorder prediction 170 192 - -
Pvu3g2613 239 MobiDBLite consensus disorder prediction 103 123 - -
Pvu3g2613 239 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Pvu3g2613 239 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Pvu3g2613 239 MobiDBLite consensus disorder prediction 165 192 - -
Pvu3g2613 239 MobiDBLite consensus disorder prediction 103 122 - -
Pvu3g2613 239 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Pvu3g2613 239 Gene3D - 125 189 IPR013088 GO:0006355|GO:0008270
Pvu3g2613 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 165 - -
Pvu3g2613 239 PANTHER GATA TRANSCRIPTION FACTOR 18 1 238 IPR044272 GO:0003700|GO:0009908
Pvu3g2613 239 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
Pvu3g2613 239 PANTHER GATA TRANSCRIPTION FACTOR 18 1 238 - -
Pvu3g2613 239 SMART GATA_3 123 177 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2613 Pvu-Chr3 48168593 48170822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2613 6 239 C2C2-Gata Transcription Factor Family AT3G50870 43.357 9.04e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu3g2613 GATA 6.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2613 - - gmx:100799154 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2613 3 48168593 48170822 Pvu3g2613 3 48168593 48170822 ECH
Pvu2g0316 2 3173297 3175069 Pvu3g2613 3 48168593 48170822 PCT
Pvu3g2613 3 48168593 48170822 Pvu2g1162 2 22932589 22943572 PCT