Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2598 ATGACGGTTGATTTGGACAACGTTTCCACAGCGTCAGGGGAAGCAAGCATCTCTTCCTCTGGCAATCAAACAAAACCCACTCCCAAGAGAAAACGAAACCTCCCTGGCATGCCAGATCCTGAGGCAGAGGTGATTGCTTTGTCGCCGAAGACGCTGTTGGCGACGAACCGGTTCGTGTGCGAGATATGCAACAAAGGATTTCAGAGGGACCAGAATCTGCAGCTTCATCGGAGAGGTCACAACTTGCCGTGGAAGCTGAGGCAGAGGTCCACCAAGGAGGTAAGGAAGAGAGTGTACGTGTGTCCCGAACCAGCGTGCGTGCACCACGACCCTTCTAGAGCCTTGGGGGACTTGACGGGGATCAAGAAGCACTTCTGCAGGAAGCACTGTGAGAAGAAGTGGAAATGCGACAAATGCTCCAAGAAATACGCCGTTCAGTCGGATTGGAAAGCGCACTCCAAAGTCTGCGGCAATAGAGAGTATAAGTGCGATTGCGGAACCGTTTTCTCCAGGAGGGATAGCTTCATTACTCATAGAGCGTTTTGCGATGCGTTGGCAAAGGAGAGTATGAGATCTCACACTGATGTTACCAAGGCTAATGAGGAAAATGATTCAAAGGTCTTAACCGACTCACCGCCGCCGGAGGTGGCGGCGGCTACAGCCACCAGCCCTGCGCAGTCAAACAGTGCCATATCTTCTGGTGGGCAGACGCAGAACCCAGAGTTGCCAGAAAATAATCTCCCACAAGTCACTGAGGAGCCACAAGCTCTTACTGCTACAAGTGGGAGCTGTGGCAGCAACAGCAGTAACAACTGCTCAACAAGCAATGGTGGTGCTACTAGTAATAGTAACAGTAGTAGTATGTTTGCAAGTTTGTTTGCTTCTTCAACATCAACTGGGACTCAACAATCTCAAACACCAGCATTCAGTGACTTAGTTAGAGCCATGGGGCCTCCAGATCATCATGCAGACATCTCAGCTCCCTCTTCATCTGAGGCCATATCTCTTTGCCTCTCCACCAGTAATGCCTCACCAATATTTGCAACAGGAGGGCAGGAGCACCGGCAGTATGCCTCGCCTCCACAACCAGCCATGTCAGCCACAGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCGGCCACAAATGCCTCTCTGCTTCGCGGCTTTGGCATTGTGTCGTCATCTTCAGCTTCAACTTCATCAGGCCAGCAAAATGGCCTGCAATGGGGTCAGCCTCAGTTAGAATCTGAGAGTGGCTCGGTTCCTGCTGCTCTTGGACTTAGTCTTCCATGTGATGGTGATTCTGGACTGAACGAATTGATGATGGGGACACCCTCAATGTTTGGTCCTAAACACACAACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGAGGCTTATCTGCCCTCATCACATCTATTGGTGGTGGTTTGGATGTTACTGCTGCTGCTGCAGCAGCAACCTTTGGTAATGGGGAGTTTTCTGGCAAAGATACTGGAAGGAGGAGCTCTTGA 1521 0.5095 MTVDLDNVSTASGEASISSSGNQTKPTPKRKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPEPACVHHDPSRALGDLTGIKKHFCRKHCEKKWKCDKCSKKYAVQSDWKAHSKVCGNREYKCDCGTVFSRRDSFITHRAFCDALAKESMRSHTDVTKANEENDSKVLTDSPPPEVAAATATSPAQSNSAISSGGQTQNPELPENNLPQVTEEPQALTATSGSCGSNSSNNCSTSNGGATSNSNSSSMFASLFASSTSTGTQQSQTPAFSDLVRAMGPPDHHADISAPSSSEAISLCLSTSNASPIFATGGQEHRQYASPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSASTSSGQQNGLQWGQPQLESESGSVPAALGLSLPCDGDSGLNELMMGTPSMFGPKHTTLDFLGLGMAAGGGLSALITSIGGGLDVTAAAAAATFGNGEFSGKDTGRRSS* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2598 506 MobiDBLite consensus disorder prediction 1 40 - -
Pvu3g2598 506 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 505 - -
Pvu3g2598 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 505 - -
Pvu3g2598 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Pvu3g2598 506 MobiDBLite consensus disorder prediction 220 284 - -
Pvu3g2598 506 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Pvu3g2598 506 Gene3D Classic Zinc Finger 132 181 - -
Pvu3g2598 506 MobiDBLite consensus disorder prediction 192 284 - -
Pvu3g2598 506 MobiDBLite consensus disorder prediction 1 29 - -
Pvu3g2598 506 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Pvu3g2598 506 Gene3D Classic Zinc Finger 38 104 - -
Pvu3g2598 506 SMART c2h2final6 134 154 IPR013087 -
Pvu3g2598 506 SMART c2h2final6 99 129 IPR013087 -
Pvu3g2598 506 SMART c2h2final6 58 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2598 Pvu-Chr3 48029628 48033140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2598 1 505 IDZ Gene Family AT5G66730 54.128 6.09e-177 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g2598 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2598 K25869 - gmx:100783947 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2598 3 48029628 48033140 Pvu3g2598 3 48029628 48033140 ECH
Pvu3g2598 3 48029628 48033140 Pvu2g0289 2 2950493 2954088 ECH
Pvu2g0289 2 2950493 2954088 Pvu3g2598 3 48029628 48033140 PCT