Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2593 ATGGCGCAAGAGCGTCGATTCGTCGCTCTCTCCGACCCTCATCTCATCCTCCATCTCTCGTTATCAATGCTTGGTGCCGCTTACACTGAAAGTGACGATGATGATGCTACCAAAGAAGATGATGATTTTGTCTTTGAGATAGATCCTACCGTCTTAGTGGATACTCGTAAGCTTATAATTGATGAACCCATCGCAGAAGGGTTAAATTCAATCGTCTACAAAGGGTGGTATGAATTCAATCCTGTATCTATAAAGGTTGTGCTTCCAATGCAAACATCAAATGCTAGTTCTGCTTGTAAAGCAAAATTTCAGCGGGAGGTTAACTTGATATCCAGAATCAAACATCAAAATATAGTAAAGTTTATTGGCGCCTCTGTTGAGCCAAGAATGATGATAATTACTGAACTTTTGGAAGGTTGTTCCCTTCCTAAATACCTAGAGAGTATTTATCCAAATACTCTAAGTTTAGAGCAATCCATAAGTTTTGCTTTGGATATTTCTCAAGCTATGGAGTATTTGCATGCAAATGGCATTATTCACCGCGATTTAAAACCTGGTAATTTGCTTCTTCGCAACGACAAAATGCAAATTTTACTTACAAATTTCGAGACAGCTAGAGAGGAGATATCTGGTGAAATGACTTCTGAGGCTGGTACATATCGATATATGGCTCCTGAGTTATTCAGTAAGGATCCACTTTCGAAAGGAGAAAAGAAATGCTATGACCACAGGGTAGACATTCATAGCTTTGCTATGGCTATGTGGGCCATAATTAAAAATCAAACTCCATTTAAAGGAAGGTGTGACTTGTTAGCTGCATATGCTACTGCAAAAAACATGAGGCCTAGTTTGGAGGGTTTTCCAGAAGTTCTACTTCCATTAATGCAGTCTTGTTGGGAAGAAGACCCAAATCTACGACCTGAATTCTCAGAGATCACCCAAATTCTTGAAAAACTTCTCCATCACTCAACAAGTATATCACCTGAGATAGAGGAGTGTCCAATTACAAGCGTGGAGGAACCTATCCCTAATTATGTTGAAGACAAATCAGAACATGTAGATGAGGCTCAGAGTCTGAATACCAGTGTCTGCATAGAGGGACAATCTGAGATCATAACAGTCGAAGCCCAAACCAAGCCTAAAAAGACTCCTAAGAAATGCAAGGGTTTATTATTTTTTAGTAAATGCTTTCACATTTGTTGA 1203 0.3924 MAQERRFVALSDPHLILHLSLSMLGAAYTESDDDDATKEDDDFVFEIDPTVLVDTRKLIIDEPIAEGLNSIVYKGWYEFNPVSIKVVLPMQTSNASSACKAKFQREVNLISRIKHQNIVKFIGASVEPRMMIITELLEGCSLPKYLESIYPNTLSLEQSISFALDISQAMEYLHANGIIHRDLKPGNLLLRNDKMQILLTNFETAREEISGEMTSEAGTYRYMAPELFSKDPLSKGEKKCYDHRVDIHSFAMAMWAIIKNQTPFKGRCDLLAAYATAKNMRPSLEGFPEVLLPLMQSCWEEDPNLRPEFSEITQILEKLLHHSTSISPEIEECPITSVEEPIPNYVEDKSEHVDEAQSLNTSVCIEGQSEIITVEAQTKPKKTPKKCKGLLFFSKCFHIC* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2593 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Pvu3g2593 400 PRINTS Tyrosine kinase catalytic domain signature 134 147 IPR001245 GO:0004672|GO:0006468
Pvu3g2593 400 PRINTS Tyrosine kinase catalytic domain signature 172 190 IPR001245 GO:0004672|GO:0006468
Pvu3g2593 400 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Pvu3g2593 400 Pfam Protein tyrosine and serine/threonine kinase 60 316 IPR001245 GO:0004672|GO:0006468
Pvu3g2593 400 ProSiteProfiles Protein kinase domain profile. 58 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2593 400 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 31 357 - -
Pvu3g2593 400 SMART serkin_6 58 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2593 400 Gene3D Transferase(Phosphotransferase) domain 1 31 351 - -
Pvu3g2593 400 SUPERFAMILY Protein kinase-like (PK-like) 51 346 IPR011009 -
Pvu3g2593 400 PANTHER SERINE-THREONINE PROTEIN KINASE 31 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2593 Pvu-Chr3 47957956 47965944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2593 40 325 MAP Kinase Kinase Kinase AT5G66710 52.962 2.39e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pvu3g2593 PK_Tyr_Ser-Thr 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2593 - K04427 pvu:PHAVU_003G251900g 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2593 3 47957956 47965944 Pvu3g2593 3 47957956 47965944 ECH