Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2592 ATGAATCATCGAGCTGTTGAAGCCCATATGAGGCTCTTCTCTCACCAATATCCTACTGCATTCACTCAACTAACTCCTCCTCAACAAGCCAAGCCAAGACGCAAGAGAAACAAAAATGGAGTTATGGGCTCCACCAAGAAGAGAAAGCTCAGTGCTGAGCAAGTTAATCTTCTTGAGAAAAATTTCTGCATTCAACATAAACTTCAATCTGAAAGGAAAGACCAACTCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTATGGTTTCAAAATCGACGTTTTCGTTGGAAGACTAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAGAATCTTCATGAAACCACCCTTCTCCAGAAATGCCACCTTCAGACTCGGGTGTTGAATCTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGCTACAAGAGCGTGGTGAAAGAGCTTCAACCAAACACTTACTGGAAGCTGTGAACCCACCATTTCTTGGAGAGTTTAGGGAGGAAGACTATGATTATGCTGATGTCTTTTACATTCCGGAGACTCATTACATCAGTGGAATGGAGTGGATTAATTTCTAA 591 0.4281 MNHRAVEAHMRLFSHQYPTAFTQLTPPQQAKPRRKRNKNGVMGSTKKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRVLNLEEQLLEAKKEIQQLQERGERASTKHLLEAVNPPFLGEFREEDYDYADVFYIPETHYISGMEWINF* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2592 196 SMART HOX_1 44 105 IPR001356 GO:0003677
Pvu3g2592 196 Coils Coil 93 113 - -
Pvu3g2592 196 Pfam Homeodomain 46 99 IPR001356 GO:0003677
Pvu3g2592 196 SUPERFAMILY Homeodomain-like 45 109 IPR009057 -
Pvu3g2592 196 Gene3D - 37 109 - -
Pvu3g2592 196 Coils Coil 128 155 - -
Pvu3g2592 196 MobiDBLite consensus disorder prediction 24 48 - -
Pvu3g2592 196 ProSitePatterns 'Homeobox' domain signature. 76 99 IPR017970 GO:0000981|GO:0006355
Pvu3g2592 196 ProSiteProfiles 'Homeobox' domain profile. 41 101 IPR001356 GO:0003677
Pvu3g2592 196 CDD homeodomain 46 102 IPR001356 GO:0003677
Pvu3g2592 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 6 195 - -
Pvu3g2592 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 195 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2592 Pvu-Chr3 47946723 47948547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2592 1 196 Homeobox Transcription Factor Family AT4G36740 46.047 5.09e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu3g2592 Homeodomain 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2592 K09338 - gmx:100803948 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2592 3 47946723 47948547 Pvu3g2592 3 47946723 47948547 ECH
Pvu2g0280 2 2895614 2897838 Pvu3g2592 3 47946723 47948547 PCT