Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2582 ATGGGTTGGTTTAAAAAATTGCTCAAGGGATCCAACCGTAAATATTCAGGAGGAAGATATCATGGGAAATATGGAGATGACGGATATTCAGAGAATCATGATAACTCAAGGGATGATTTGACGGAAATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATCCGAAAGGGAAAAAAGTTATTGAGGATGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTGATGATGAGGAAGACAAATGTGTTGGTGAAGTTCAGCAAGATGAAGATGACCATCATGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAGGAAGATGAACAACTTGCCAAGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACACTGATTCTTTATTTCAACCTTTTGCACACTTATTCCCTCCTGTATACAGAACCTGTGCTGGCTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCTGAATGTTTTTGTTGTCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAATAACTTTATCCCACCAAACTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGAGATGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAATGTCTTGACTCATCTATCATGGATACTCATGAATGCCAACCTCTCTATGTTGAAATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAACGAAGCCATGGAAGGAGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCTACTATTTTAAGGAGGCCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGACTGATCCGCCGATGTGAAGTGACAGCCATACTTGTTTTGTATGGTCTTCCCAGGCTATTGACTGGATCAATCCTGGCTCACGAAATGATGCATGCGTGGCTTAGACTTAAAGGCTATGGCAATCTGAAGCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGGTAGAATCGGAGATCTATTCCAGCACTGGGAATGAAGGTGCATCATCATCATCATCTTCTTCTTCCTCATCCTCTTCGTCACCTTCGTCCTCTTCATCATCTAAGAAGGGTAAACGTTCTGATTTTGAAAAGAAACTTGGTGAATATTTCAAACACCAGATTGAGTCAGATAGTTCATCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGGCTTAAAAGGACCCTTGACCATATCCGAATGACTGGAAGTTTTCCATATTGA 1590 0.4145 MGWFKKLLKGSNRKYSGGRYHGKYGDDGYSENHDNSRDDLTEIEKEEIDRAIALSLSEADPKGKKVIEDDSESEDDELCPLDDEEDKCVGEVQQDEDDHHAQIQQDEDKNLDEFQLEEDEQLAKAIQESLSISSPPRSDTDSLFQPFAHLFPPVYRTCAGCNAEIGSGRFLSCMGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCNNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLKPEVEEGICQVLAHMWVESEIYSSTGNEGASSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2582 529 MobiDBLite consensus disorder prediction 447 471 - -
Pvu3g2582 529 MobiDBLite consensus disorder prediction 1 40 - -
Pvu3g2582 529 MobiDBLite consensus disorder prediction 447 476 - -
Pvu3g2582 529 Pfam LIM domain 158 212 IPR001781 -
Pvu3g2582 529 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Pvu3g2582 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Pvu3g2582 529 Pfam Protein DA1 307 524 IPR022087 -
Pvu3g2582 529 MobiDBLite consensus disorder prediction 19 40 - -
Pvu3g2582 529 CDD LIM_DA1 158 210 - -
Pvu3g2582 529 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Pvu3g2582 529 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 529 - -
Pvu3g2582 529 Gene3D Cysteine Rich Protein 154 215 - -
Pvu3g2582 529 SMART uim 117 136 IPR003903 -
Pvu3g2582 529 SMART uim 43 62 IPR003903 -
Pvu3g2582 529 SMART lim_4 157 209 IPR001781 -
Pvu3g2582 529 PANTHER PROTEIN DA1-RELATED 2 1 529 IPR045218 -
Pvu3g2582 529 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Pvu3g2582 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 242 - -
Pvu3g2582 529 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2582 Pvu-Chr3 47788365 47794718 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu3g2582 DA1-like 2.2e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2582 - - gmx:100806605 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2582 3 47788365 47794718 Pvu3g2582 3 47788365 47794718 ECH
Pvu3g2582 3 47788365 47794718 Pvu2g0254 2 2660954 2668059 ECH
Pvu2g0254 2 2660954 2668059 Pvu3g2582 3 47788365 47794718 PCT