Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2579 ATGGGAATAGCAACACCATCTTCTTCGCTTCCTTCTATAATCTCTCACTCCAAGACACACCAGCAACACCATTCGAATTCTATGTCCCAAGATTACCACCACCACCAAGGAATCTTCAGCTTCCCCAATGGGTTCGAGAGATCGGCTACAACGATGAGTCACCAGGACCCTCACCAACAACAGCAGCAACAGCAGCAGCAGATTCGTAGGGACAAAGTGAGGGTGCAAGGCTTCGAGCCACAACAAACTTTGGTCCCCATAGAGGAAGACGAACCGGGAAGCCTACCGGTGTACGAAACTGCGGGGATGTTATCGGAGATGTTCACTTTCCCTCCCGGCGCCGCCACAGAATTACTGGAGCAACAGCAACAGCAGCAACAGCCAATGACGACGACGTTTCGGTCGTCGGCGAGAGCAGTGGGCAGTGGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGCTAACCGGGTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATCATGGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAGCATAGTTCAGCAGCATCAGCATCATCATCATCACCACAACCACCATCATCACCATCAGATGTCGAGCATTAATGCAGACTCTGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCTCCCCCTCCTCCTCCTTCTTCCACACTCCACATGTTACTTCCCACTTTTCCTCCGGGCTCAGGAGGGTCTTTCGGTCAATTCACGTGGCTCCCTGACACTGCTCAAGATGGAGGAGGACCCAGTACGGTTGTGGAAGGCCCGGGTCACGGCCAAGGTCTTTCCTTATCCTTGTCCTCCTCCTTAGAAGCTGCGAAAGCGGAGGAACTTAGGATGGGGGATAGTGGATTCTTGTATTACAATCAAGCTAGTGGAGGACCCTCTTCCTATAAGAGTGCTCTTGGGGGTCATCACCACCAAGCATTGTTGGGACAGACCCACCAGGGGCATGTTGCCTTTGCAGCATCATCCTCCACCTCATCCTTAGGTGTTGTCAATGCCTTGAGGAATTCAAAGTATATTAAGGCTGCTCAGGAATTGCTTGAAGAGTTCTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAACTCTCAAACCCTAGCTCCAATCATGGAGCTAGTGGCGGCGGCGGCGGTGCTTCCTCGTCTTTATCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTAGATCGGAGATACAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTTGACATGGTAATGGGCTTTGGTTCTGCGGTTCCATACACAGCACTTGCACAGAAAGCAATGTCTCGTCACTTCAGGTGTCTAAAGGATGCCATAACAGCGCAACTGAAGCACAGTTGTGAGCTGTTGGGAGAGAAAGATGGGGCAGGGAACTCAGGGTTGACCAAAGGAGAGACCCCGAGGCTCAAGTTGCTTGAACAAAGTTTGAGACAGCAAAGAGCGTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCAAGGGTTCGATTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCTGAAGGGGCAGAAGACGAGAGAGAGGGGAATCAAAGCAGCAGCAATAACAGTGGCCACCAACTGGCACAAACCCCAACACCCTCCACTACGGCATCGACAGCAACAGCGCCACCACCGCCTCCAACAACATCTACAGCGACCACACCACCAACCGCCAAAAGATCCGACACCGAAAGCGACGCTTCACTCGCCCCAATAAATAACAACAGGCCACAGGGAGCCTTCTCGGAAACACAGCCCAACTCCTCCACCACCGCCACCGCCTCAGAGGTGGCGCCTCCCTCGGAGCTTTCCCGGTCGATGGGGGCTGATGACTCGTGCCGGCACGGTAGCCTCGTTGTGACGGATTTTGGGACCGGTCCTGGCGCTTCTGACATTGGTTCCACACTGATTAGATTTGGGACCACCGCCGGTGACGTGTCACTTACACTAGGGCTACGTCACGCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATTTAA 2337 0.5237 MGIATPSSSLPSIISHSKTHQQHHSNSMSQDYHHHQGIFSFPNGFERSATTMSHQDPHQQQQQQQQQIRRDKVRVQGFEPQQTLVPIEEDEPGSLPVYETAGMLSEMFTFPPGAATELLEQQQQQQQPMTTTFRSSARAVGSGGSEWYGNRQGMLTGLGPLGDSKNHHHHGSVNSRDSSSSSIVQQHQHHHHHHNHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQDGGGPSTVVEGPGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNQASGGPSSYKSALGGHHHQALLGQTHQGHVAFAASSSTSSLGVVNALRNSKYIKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNHGASGGGGGASSSLSKDVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGNSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEDEREGNQSSSNNSGHQLAQTPTPSTTASTATAPPPPPTTSTATTPPTAKRSDTESDASLAPINNNRPQGAFSETQPNSSTTATASEVAPPSELSRSMGADDSCRHGSLVVTDFGTGPGASDIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSVRDFGGI* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2579 778 MobiDBLite consensus disorder prediction 140 205 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 644 658 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 223 238 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 220 282 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 43 68 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 186 200 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 621 643 - -
Pvu3g2579 778 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 84 767 - -
Pvu3g2579 778 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 767 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 610 716 - -
Pvu3g2579 778 Pfam Associated with HOX 354 486 IPR006563 -
Pvu3g2579 778 Pfam Homeobox KN domain 556 595 IPR008422 GO:0003677|GO:0006355
Pvu3g2579 778 SUPERFAMILY Homeodomain-like 541 606 IPR009057 -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 383 418 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 1 68 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 659 706 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 1 36 - -
Pvu3g2579 778 ProSiteProfiles 'Homeobox' domain profile. 536 599 IPR001356 GO:0003677
Pvu3g2579 778 SMART HOX_1 539 603 IPR001356 GO:0003677
Pvu3g2579 778 SMART prehox3 348 487 IPR006563 -
Pvu3g2579 778 CDD homeodomain 539 600 IPR001356 GO:0003677
Pvu3g2579 778 Gene3D - 542 604 - -
Pvu3g2579 778 MobiDBLite consensus disorder prediction 383 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2579 Pvu-Chr3 47740359 47748160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2579 348 778 Homeobox Transcription Factor Family AT2G23760 54.415 4.05e-149 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu3g2579 POX 2.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2579 - - gmx:100814959 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2579 3 47740359 47748160 Pvu3g2579 3 47740359 47748160 ECH
Pvu3g2579 3 47740359 47748160 Pvu2g0253 2 2626414 2633952 ECH
Pvu2g0253 2 2626414 2633952 Pvu3g2579 3 47740359 47748160 PCT