Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2577 TTGTCATGGTCAGTGGACGAGAAGTCGCTCAAAGACGCTTTCTCTTCCTTCGGAGACGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTATCATTTTTTCAAATGAAGATGATGCCAAATGTGCAAAGGAAGCAATGGATGGAAAGGCACTGTTAGGCAGACCATTGAGGATAAGTATTGCACTTGAGAAGGCCCGAGGTGTACCAGTTGTAGTTCCTCGACTTTCAGATATTGGGCATTTGAACAGGCGCTAA 282 0.4468 LSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFIIFSNEDDAKCAKEAMDGKALLGRPLRISIALEKARGVPVVVPRLSDIGHLNRR* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2577 93 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 72 IPR000504 GO:0003723
Pvu3g2577 93 SUPERFAMILY RNA-binding domain, RBD 1 76 IPR035979 GO:0003676
Pvu3g2577 93 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 66 IPR000504 GO:0003723
Pvu3g2577 93 Gene3D - 1 76 IPR012677 -
Pvu3g2577 93 PANTHER TRANSFORMER-2-RELATED 1 90 - -
Pvu3g2577 93 SMART rrm1_1 1 68 IPR000504 GO:0003723
Pvu3g2577 93 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2577 Pvu-Chr3 47705388 47709578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2577 1 87 Eukaryotic Initiation Factors Gene Family AT1G22760 31.183 3.01e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2577 - - pvu:PHAVU_003G2503000 186.037