Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2566 ATGTTTCACTACAACGCTAAGTTCGCTCTGATTCTCACCATCTTCGTTTTCTGTTCAACGATCGCCCAAACCAACACCAACTGCACGCGCAGTTGCGGACAACACTCCCTGCAATACCCTTTTGGCTTCTCTTCTGGCTGCAAACTCAAACTAAACTGCAGCAACGACAACATCAAAATCAAAATCGGCGAGTTTGAGGTTCAGAATATAACCTCTGATAGCATACTCGTGAGTCTTCCGGTGAAGTGCAACCGCAGCATGGGAATCGTAGACCCTCTTTTCGGTGTCAACTTTGCTCCTACGTTCAACAATAGCTTTCTGTTGCAGGGTTGCAAGTCCAAGCTCAATGGCTGCGATATTCCCCCATCGAGTTTCGTTGGCGAGCACAACCCGGTGGAGGGGTGCGGCCGGAAGAACGAAAGTGAAGATTTTATTTGCTTCACGCAGTTGCAGCGTAATAGTTCGCGTGAAGATGTGCTCGCGCAGCGAGATTTGAAGGGAAGTGGGTGTAGCTTCTTGTTTTCTGCTCTTGCTTATGATAAGAGTAAAGGGAAAGAGCTTTTGCTTCAATTACAGATGCTTGAGTTGGGGTGGTGGCTTAAAGGGTCGTGTAATTGTTCAAACAATGCATCCTGCACGAAGATCAAGCTTGCCGGAAGAGAACAAGGTTACCGGTGTCAATGCCATGAAGGTTTCGTCGGCGACGGTTTCAAAGACGGCGATGGTTGCCGGAGTATTCCTCCTCAATGCAAAGCTTCAACACTAAGGTCTGGCGGATGTAGAAAAGCAATCAAAATCGGTGTCCTTGTTGGAGGGATCATAATTGCGACTACCGTGGTAGTTGCTCTGTCTCTTCTATGTTACTTTACTAGGCGTCGTTCCTCTTGGCTGAGAAAACAATTGACAGTAAAGCGCCTATTACGAGAAGCTGGAGGCGACTCTACTGTTCCTCTATATCCCTACAAAGAAATAGAAAGGGCCACAAGTTTTTTCGATGAAAAACATAGGCTGGGAACTGGGGCTTTTGGCACAGTTTATGCTGGACACCTTCACAATGACGAGTGCGTTGCTATAAAAAAGATTAAGTATAGAGACACCAACAGTGTTGACCAAGTCATAAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTGCGCCTCCTAGGTTGTTGCATAGAAGGGGGAGAGCAGATACTTGTGTATGAGTTTATGCCCAACGGAACACTATCTCAACATTTGCAAAGAGAGAGGGGCGGAGCACTTCCTTGGACAGTAAGACTCACCATTGCTACTGAAACTGCTAATGCTATAGCATACCTTCATTCTGCAATTAACCCTCCAATATATCACAGAGACATAAAATCCAGCAACATACTCTTGGACTATAGTTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGCATGTCAGAAACATCACATATCTCAACCGCTCCACAGGGGACCCCGGGCTATGTTGATCCCCAATACCACCAGAACTTCCACCTTTCTGATAAGAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTAGTTGATTTTTCGCGACCTAAAAGTGAAATCAATTTGGCTGCACTTGCAGTTGAAAGGATTAGGAGGGCTTGTCTAGATGAAATTATTGACCCCTTCCTTGAGCCACATAGGGATGCTTGGACACTCTATTCTGTGCACAAGGTGTCTGAGCTTGCATTTAGATGCCTTTCTTTTCATAGTGACATGAGGCCTACCATGATTGAAGTGGCTGAGGAGCTTGAACTTCTCAGACGCAGTGAGTGGGAAAATTTGGAGGAAACCATATGCACAGCTTCATCGGTTGGGTCCGTGTGTTCATCCCCTCGAATTAGAAGAGAGAATTCAGTGGTTGGTGTTAGTTTTGAGAGAGTTCCAGGGCAAGGGAGTGAGATATTGATTGTTCCACCCAAGACTGAAATGTTTTTGCAATCAATGAAGGAAGTGAAGGACAGCTCTCCTGTATCTGTGCATGATGCTTGGCTAAGTGGAACTAGCTCACCTTCAACAATTGCTAGTTAG 2088 0.4545 MFHYNAKFALILTIFVFCSTIAQTNTNCTRSCGQHSLQYPFGFSSGCKLKLNCSNDNIKIKIGEFEVQNITSDSILVSLPVKCNRSMGIVDPLFGVNFAPTFNNSFLLQGCKSKLNGCDIPPSSFVGEHNPVEGCGRKNESEDFICFTQLQRNSSREDVLAQRDLKGSGCSFLFSALAYDKSKGKELLLQLQMLELGWWLKGSCNCSNNASCTKIKLAGREQGYRCQCHEGFVGDGFKDGDGCRSIPPQCKASTLRSGGCRKAIKIGVLVGGIIIATTVVVALSLLCYFTRRRSSWLRKQLTVKRLLREAGGDSTVPLYPYKEIERATSFFDEKHRLGTGAFGTVYAGHLHNDECVAIKKIKYRDTNSVDQVINEIKLLSSVSHPNLVRLLGCCIEGGEQILVYEFMPNGTLSQHLQRERGGALPWTVRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMSETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFSRPKSEINLAALAVERIRRACLDEIIDPFLEPHRDAWTLYSVHKVSELAFRCLSFHSDMRPTMIEVAEELELLRRSEWENLEETICTASSVGSVCSSPRIRRENSVVGVSFERVPGQGSEILIVPPKTEMFLQSMKEVKDSSPVSVHDAWLSGTSSPSTIAS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2566 695 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2566 695 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 13 679 - -
Pvu3g2566 695 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Pvu3g2566 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Pvu3g2566 695 Pfam Wall-associated receptor kinase galacturonan-binding 28 75 IPR025287 GO:0030247
Pvu3g2566 695 Gene3D Phosphorylase Kinase; domain 1 293 406 - -
Pvu3g2566 695 Gene3D Laminin 199 239 - -
Pvu3g2566 695 SUPERFAMILY Protein kinase-like (PK-like) 314 605 IPR011009 -
Pvu3g2566 695 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 679 IPR045274 GO:0007166
Pvu3g2566 695 Pfam Protein kinase domain 332 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2566 695 SMART serkin_6 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2566 695 Gene3D Transferase(Phosphotransferase) domain 1 407 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2566 Pvu-Chr3 47578853 47583238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2566 1 692 Receptor kinase-like Gene Family AT2G23450 52.422 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pvu3g2566 Pkinase 7.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2566 - - gmx:100810861 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0239 2 2498853 2503451 Pvu3g2566 3 47578853 47583238 PCT