Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2540 ATGGAACTGAGCTTGGATTTGAGCTTGGCCTTTGTCCCCGGAAGAACCGTTTGTCAGATTCTTGGCGAGGTTGCTCAGAGCGAAGATGGGTCTCAGAGAACACCCACGCTTGAGGATTTTCTCCAAAAGTTAGAAGATGAGAAGAGGAAGATCGACTCCTTCAAACGTGAACTTCCTCTCTGCATGCTCCTTGTGAACGATGCTATTACTAAATTGAAAGAGGAGATAAATGGAGGAGTGAGAATGCACGAAGAACCCGTTGTTGAAGAATACATTCCACTTATGAAAACCAATTCTGAAGGAAGTGAGACTTTAAGCATGGATACAGAACGCAGTAACATGAAGAATTGGATCAACTCTGTTCGGCTATGGAACGTTGAATCCAAACCGAGGAATGAAGAGGACGGTCGATGTGTCCCCAACAATCCAAATCAAGCACAGAATGAGACCAACAAGAGTAGAGGAGCACCACTAGCATTAAATGGAAACAATCGTGTGTCAAAGACAGTGATGAGTGAAGACAAGGGGGTGTCACAGATTCCTAGCCTTGGTTTGATGAGACCAGTGTTTGAATTGAATAATAGAAAAACAGAAAGTGGTAATGAACATGGGTCGTCCTTGATTACAAGCTCATCAGAGATAAAGTGTGAAGCACCACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAGCTTCATAGGCGATTTGTTGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTCTTCATTTGGGCATGCTAATAGTGAATTATGCCTGATGGTACAAGATAAAGGTGGAGATAATAATAAATCAAGAGGGAACTTATCACAATCTGGCTCTCCACAAGGTCCTCTGTTCTTAGGAGGGTCTGGACGAAACAGCATGGACACAGAAGAAGATGAACACTCAGATTGCCACAATTGGAAAGGTGGCCTTCACCACCAACCAGAAGCTGAACTTCTATGA 1086 0.4401 MELSLDLSLAFVPGRTVCQILGEVAQSEDGSQRTPTLEDFLQKLEDEKRKIDSFKRELPLCMLLVNDAITKLKEEINGGVRMHEEPVVEEYIPLMKTNSEGSETLSMDTERSNMKNWINSVRLWNVESKPRNEEDGRCVPNNPNQAQNETNKSRGAPLALNGNNRVSKTVMSEDKGVSQIPSLGLMRPVFELNNRKTESGNEHGSSLITSSSEIKCEAPPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFRRPQVSSFGHANSELCLMVQDKGGDNNKSRGNLSQSGSPQGPLFLGGSGRNSMDTEEDEHSDCHNWKGGLHHQPEAELL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2540 361 Coils Coil 37 57 - -
Pvu3g2540 361 MobiDBLite consensus disorder prediction 307 324 - -
Pvu3g2540 361 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Pvu3g2540 361 PANTHER TRANSCRIPTION FACTOR HHO5 1 353 - -
Pvu3g2540 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 283 IPR017930 -
Pvu3g2540 361 MobiDBLite consensus disorder prediction 199 218 - -
Pvu3g2540 361 MobiDBLite consensus disorder prediction 195 228 - -
Pvu3g2540 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 353 IPR044787 GO:0003700|GO:0006355
Pvu3g2540 361 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Pvu3g2540 361 MobiDBLite consensus disorder prediction 302 361 - -
Pvu3g2540 361 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 226 281 IPR006447 GO:0003677
Pvu3g2540 361 MobiDBLite consensus disorder prediction 334 361 - -
Pvu3g2540 361 MobiDBLite consensus disorder prediction 129 162 - -
Pvu3g2540 361 Gene3D - 225 283 - -
Pvu3g2540 361 MobiDBLite consensus disorder prediction 138 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2540 Pvu-Chr3 47244605 47247316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2540 1 288 G2-like Transcription Factor Family AT2G03500 38.679 6.67e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu3g2540 Myb_DNA-binding 8.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2540 - - gmx:100794220 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2540 3 47244605 47247316 Pvu3g2540 3 47244605 47247316 ECH
Pvu3g2540 3 47244605 47247316 Pvu2g0218 2 2328158 2330351 PCT