Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2539 ATGACCCCATGCGGCGCGTGCAAGTATCAACGACGGAGGTGCGGGGCGGATTGCCTTATGGCGCCGTATTTTCCGGCAGAGAGCATTCAGCGGTTCGCGTACGTTCACCATGTGTTCGGCGGGGGCAACGTGAGTAACATTCTGAAGTCAACGAAGCCGGAGTTGCGGAAGTGGACGGCGAGGGCGCTGACGTACCAAGCGGAGGCGCGTGTGAGAGACCCGGTGCACGGGTGCGTTGGGGTGATATGCGAGCAGGAGGAGAGTCTTCGAATCTTGAAAGAGAAGCTAGAGAAGGCAAAAAGGGAAGTGGCCAAATACGTGGGTCCAGAGGTTATGCAAAAGATGATCGAGCAGTGTTCCTCCTATCCGCATGCGAATATGGTGGACCTTGAGGCTCCTCTCGCAATCACGATTGATGATGCCGATCTTTCTTCATGGGATCCTTTTCCGGCTTGGGAACCAGCTTTTTCGCGGCTGCAGCCACCTCAAGGTGGCGACGCTAAGGGTGAGACTATTGCTCCTCCTTCTTGA 531 0.5593 MTPCGACKYQRRRCGADCLMAPYFPAESIQRFAYVHHVFGGGNVSNILKSTKPELRKWTARALTYQAEARVRDPVHGCVGVICEQEESLRILKEKLEKAKREVAKYVGPEVMQKMIEQCSSYPHANMVDLEAPLAITIDDADLSSWDPFPAWEPAFSRLQPPQGGDAKGETIAPPS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2539 176 Coils Coil 82 102 - -
Pvu3g2539 176 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Pvu3g2539 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 2 126 - -
Pvu3g2539 176 MobiDBLite consensus disorder prediction 154 176 - -
Pvu3g2539 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 126 - -
Pvu3g2539 176 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2539 Pvu-Chr3 47240211 47240741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2539 2 117 AS2 family AT5G66870 45.690 6.84e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu3g2539 LOB 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2539 - - gmx:102663028 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2539 3 47240211 47240741 Pvu3g2539 3 47240211 47240741 ECH
Pvu3g2539 3 47240211 47240741 Pvu2g0216 2 2305438 2308774 PCT