Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2538 ATGTCGTCGATGAATTCGCCGTGCGCTGCGTGCAAGCTTCTGCGGCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCGAAACTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGGCGCGATTGCGTGACCCCGTGTATGGCTGCGTGGGATTAATTTCGCTACTACAGCAACGGCTCCGTCAAATCCAAATGGAGCTTCACATAGCGAAGAAGGAATTCTCCACTTATGTTAGTCCTCAGACCATGCAGATTCTCTTGGCCAATCCTGGGATGGTGCCGCCTGCTGAGATTGTCGGGCCTCCTCCGCATCAACCTATGTTCAATCATGGAGGCAACAACATGGTGCCGCAGCAGATTTTGGTTGGCCATGGCGGTGGCCAGACGGTGGTTCGCGACCCTCAGCAGCAGGATTTTCAAGAAGCGCAGCAGATAATTCTTGCAACTAGGGAGCAGCAACAGATGTTTAGAAACTATGAGCACCAAGTTTATGGTGGTTTTGAACCTGGAAATGGTGGATTTGGGAACCAAGCAGAATTGTTGTCTCCTTCTTTGGCTCATGGAAATTTTGGTAATGTTGGAGCTTACCAAATGCAGCAGCAAGGAGAACAACATCCCATTGAGGCACAGTTGCTCCTCTCGCCACAACAGGGACAGCCCCATCAGCAACAACAGTGCGAAAGTGAGGATGGAAGGAATGTGCTTGATTTCTCAATCAAGTAG 822 0.5353 MSSMNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQQRLRQIQMELHIAKKEFSTYVSPQTMQILLANPGMVPPAEIVGPPPHQPMFNHGGNNMVPQQILVGHGGGQTVVRDPQQQDFQEAQQIILATREQQQMFRNYEHQVYGGFEPGNGGFGNQAELLSPSLAHGNFGNVGAYQMQQQGEQHPIEAQLLLSPQQGQPHQQQQCESEDGRNVLDFSIK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2538 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 257 - -
Pvu3g2538 273 MobiDBLite consensus disorder prediction 248 273 - -
Pvu3g2538 273 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pvu3g2538 273 Coils Coil 86 106 - -
Pvu3g2538 273 MobiDBLite consensus disorder prediction 248 264 - -
Pvu3g2538 273 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pvu3g2538 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2538 Pvu-Chr3 47230938 47232422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2538 1 120 AS2 family AT5G66870 73.333 1.69e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu3g2538 LOB 6.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2538 - - gmx:100796406 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2538 3 47230938 47232422 Pvu3g2538 3 47230938 47232422 ECH
Pvu2g0216 2 2305438 2308774 Pvu3g2538 3 47230938 47232422 PCT