Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2514 ATGGTGGTGATTGATGAAAGGAACCGCGATCGTGCGAATAGGAGGGACGTGGTGGAGTTTCCACAATATGATCAAGCTGTGACTGTGGCATATTATGGGGAGGAGTTGCATGGGGGCGTACCACTACCCCACTCCTCAAGAATGTCTCCTTTAAACATGGATAAACAAAACAAGGTGGTGGAGAATAAATACAAACGATTGAATAATAATCAGACCAAGCAAGCAACGCCTGCTGAGGCTCAGAAGTTTTCAAGTTCCATGAAGGCTGCAGTAGAAGGAACATCCTCTCGTGGCGAGGTCATGTCATCTGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCAGAATTTCCTAGTTTTGTGAAGTCTTTAATTAGATCACATGTTGCTAGTTGTTTTGGGATGGGCCTTCCTGTGTCCTTCTGCAAAAGACACTTACCGGATAAGGATACAACAATCATTTTGGAAGATGAATATGGTAAAGAATACAATACAAAATTCATTGCCTGTAAGATGGTATTGAGTGCTGGATGGAGACAGTTTTCTGCTGAGCACAAATTGCAGGAAGGTGATGCGGTGGTCTTTCAATTAGTTGAACCAACCAAATTTAAGATTTATATAATAAGAGCTAATAATACGAGGGAACTAGACGGGGCCTTTCTGAATCTTGATAGTTGCACAAAACAAAAAATGGGAGGCAAAGATAGCACAGATACTGATGTTGTGACATGCAATAGCTCAAAGAGAAAGCATGGCAAATCTGTCCCACTAGATATCCAAAAGAAAAAGAAGGCAAACTTGTCGAGATTGAGACCCAAGGCCGGGCCATCAGTAGAACAATCAGAAAATGATAGCGAGGAAGCTCTTTCAGAAGTTGTGGAGGAGTTTAAAATGCTTGAGTTTGAAGATATGAGAGGCTTTGAAAATTTTAGCATCATAGTTGAGGGAGTGTCAATAGATGTTGAATTTCCTACCGAAGTTAGAAACAAGTACTACAGGCTATGCTGCAGTCAGCATGCATTTCTTCATGAGAATCTCATCAAGGGCATGAACTATAAGCTGATTGCTGGAATTATATCTGAAACTGTCAACATTGCTGATGCCATAAGGGTTAGTGTGATATGCACCCCACGTTTTGAATTTGCTAACTGGGACAAAACATTGCTAGCCTTTGAGCATCTGGGCATGAATGTTGAGTTTCTAAGGATCCGATTACGCCGGCTTGTAAGCATTGCTTATGAGAAAAATGATGTCTCAGAGGCCAAAAAGTACTTGGCATATAGAAATGAGCCCAGTCGTGCAGACGATGAAATAAGGATCATGGAAGTCAAGCTTGAAGAATTGAAGGGAGCATGTAATGGTTTTGGTGCTTATCTTGGGAGTTTGAAGGGCAAAGCTGAAAACTATCAGATGAAGTTTCGAAGAGAGGTCGATGCTCCTTGGTGA 1452 0.4167 MVVIDERNRDRANRRDVVEFPQYDQAVTVAYYGEELHGGVPLPHSSRMSPLNMDKQNKVVENKYKRLNNNQTKQATPAEAQKFSSSMKAAVEGTSSRGEVMSSAVLQAEEVQSNLRPEFPSFVKSLIRSHVASCFGMGLPVSFCKRHLPDKDTTIILEDEYGKEYNTKFIACKMVLSAGWRQFSAEHKLQEGDAVVFQLVEPTKFKIYIIRANNTRELDGAFLNLDSCTKQKMGGKDSTDTDVVTCNSSKRKHGKSVPLDIQKKKKANLSRLRPKAGPSVEQSENDSEEALSEVVEEFKMLEFEDMRGFENFSIIVEGVSIDVEFPTEVRNKYYRLCCSQHAFLHENLIKGMNYKLIAGIISETVNIADAIRVSVICTPRFEFANWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYEKNDVSEAKKYLAYRNEPSRADDEIRIMEVKLEELKGACNGFGAYLGSLKGKAENYQMKFRREVDAPW* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2514 483 ProSiteProfiles B3 DNA-binding domain profile. 122 213 IPR003340 GO:0003677
Pvu3g2514 483 MobiDBLite consensus disorder prediction 234 258 - -
Pvu3g2514 483 Gene3D - 101 215 IPR015300 -
Pvu3g2514 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 48 420 - -
Pvu3g2514 483 MobiDBLite consensus disorder prediction 268 287 - -
Pvu3g2514 483 Pfam B3 DNA binding domain 122 212 IPR003340 GO:0003677
Pvu3g2514 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 48 420 IPR044837 -
Pvu3g2514 483 SMART B3_2 122 213 IPR003340 GO:0003677
Pvu3g2514 483 CDD B3_DNA 120 211 IPR003340 GO:0003677
Pvu3g2514 483 SUPERFAMILY DNA-binding pseudobarrel domain 117 213 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2514 Pvu-Chr3 46941000 46945458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2514 104 257 B3 DNA Binding Superfamily AT3G19184 41.026 1.74e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu3g2514 B3 4.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2514 - - vra:106768002 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2514 3 46941000 46945458 Pvu3g2514 3 46941000 46945458 ECH