Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2510 ATGTCCCAGCGATCAACGCCAGCGCCATTTTTGACGAAGACGTATATGTTGGTGGATGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAATTGGGAAACACTTTTGTCGTTTGGAAACACGCCGATTTCGCTAAGGATTTGCTTCCCAAATACTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTTCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGGCAAAAGGAGCTCCTTGCCGAGATCAAGCGGCGGAAGACAGTGCTGCAATCTCCGGCGACCGGAAAGTCCGGCGGAGGGAACATCTCGGCGTCTAACTCCGGCGGAGACGACATGGGGTCAACGTCGACGGGGTCGGTGGAGGGTGCAACGACGTCGCAGTGCGCGGATTTATCGGGCGAGAACGAAAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGTGCGAAGAAGCAGTGCAACGAACTGGTGTCGTTTCTGAGGGAGTCACTGAACGTGTGTCCCGATGTGATCAACCGCATCATTCGGCAAGGAACGTGTGGGTCCAGCGACGATGCGGTGCGTTTTGAATGTATTCGTGATGATGACGACGAAAATGCGGTAGGTGAGTGTGGAGCCAAAGTCGATGATGAAAGAGGTGGAGAAAGTTTGAAACTGTTCGGTGTTTGGTTGAAGGGCGAAAATGGGAATGAAGAAGATAAAGTGAAGATTGGTACTAACTGGCGCAAGAGAGGGCGCGATGACCCTATGGCCGGCACTGCGAAGGAGCTGAAAACCCTTGTGTAG 837 0.5257 MSQRSTPAPFLTKTYMLVDDPATDDVISWSELGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLAEIKRRKTVLQSPATGKSGGGNISASNSGGDDMGSTSTGSVEGATTSQCADLSGENEKLKKDNEKLSGELARAKKQCNELVSFLRESLNVCPDVINRIIRQGTCGSSDDAVRFECIRDDDDENAVGECGAKVDDERGGESLKLFGVWLKGENGNEEDKVKIGTNWRKRGRDDPMAGTAKELKTLV* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2510 278 MobiDBLite consensus disorder prediction 104 147 - -
Pvu3g2510 278 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu3g2510 278 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu3g2510 278 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu3g2510 278 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu3g2510 278 Gene3D - 2 101 IPR036388 -
Pvu3g2510 278 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Pvu3g2510 278 MobiDBLite consensus disorder prediction 104 146 - -
Pvu3g2510 278 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu3g2510 278 Coils Coil 142 169 - -
Pvu3g2510 278 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu3g2510 278 MobiDBLite consensus disorder prediction 259 278 - -
Pvu3g2510 278 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 260 - -
Pvu3g2510 278 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 260 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2510 Pvu-Chr3 46868205 46871391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2510 2 244 HSF AT4G36990 55.020 9.75e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu3g2510 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2510 K09419 - gmx:100801897 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2510 3 46868205 46871391 Pvu3g2510 3 46868205 46871391 ECH
Pvu2g0195 2 2097022 2099089 Pvu3g2510 3 46868205 46871391 PCT