Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2499 ATGTCATACGTCATTTCCTTCGTTTCTTTTCCATCGGTTTCTCAAACTAGCCACCTCCATTTCCATTACATTACCCACATTACATTAACAAACACAAACATAAACACCTGCCTCTGCAACCAACTCCCAATCCCCAACAGTCAAAAGAGAAAACTCCTAACGCTCCTTTCACCTTTTTCTCTTCTCTCCTACCTTCAACCAAAACAATACAATCTCTTCTCTTCTTCCTCCTCTTCCACACACCACCAAATCTCCCTTCCTCCCTCCATCTCCATGCTTCGCTTCTGCACCTCCAAAACTGCACAACAAAATGCACTACAAGATGGGATCTCCGCCTACAACCCTTCTTCTGCTGCCAACGTCTCTTCTTCCTCGGTGCCACTTAATAATGAAACCGATGAGTACGACTGCGAGAGTGAGGAGGGTGAGGCGTTGGTAGATGAGGTTCCAATTCCACCGAAGTGTTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCTGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGAAGTAAGATCAATGAGAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAACTTCAGCTGCAAGTACAGATGCTGTCAATGAGAAATAGGTTGAGTTTGCATCCTATGTTCTTTCCAGAAGGTTTGCAACCCCCGCAACTGCCTCAGATGAGAATGGATCCAAGTGAAGAAAACAGGTCTATCCCTTCAAACACTACTGCTACTCTGCCTATCCAACAAGAAAACCCCATGCCCTATTCATCCACTCTGCCTAACAAACAAATTGTGGCAGATCAACCATCCATGTCCGCTGCATCATATTTATTCAACTCTGAAACTTCTTTTAGGCTGGAATCTCATATTCCTGAAAATATAAGATCATTTCAACTCAGAAGTTTTTCTGAGATGTGCAGAGAAGACATATTGCAGCACCAACTTTTAAATGCAAACCATTCAGATACCAATCCATTAGGTTGTTCTCAAGGCACGTTGGCTACAGCATCAATTTCCTTTGATATGCAAAAATCTGCAGTTAAAGACAACAGCTCTTTGGAAAACTGCATCCCTGGAAGTGATCAGTCTGGACTGGTGTTGAGAAATAGTGAGCCCAACATTATTCTGACCCAGCGGTTAATTGGGTGA 1212 0.4249 MSYVISFVSFPSVSQTSHLHFHYITHITLTNTNINTCLCNQLPIPNSQKRKLLTLLSPFSLLSYLQPKQYNLFSSSSSSTHHQISLPPSISMLRFCTSKTAQQNALQDGISAYNPSSAANVSSSSVPLNNETDEYDCESEEGEALVDEVPIPPKCFRSGSSSKRSRAAEVHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNRLSLHPMFFPEGLQPPQLPQMRMDPSEENRSIPSNTTATLPIQQENPMPYSSTLPNKQIVADQPSMSAASYLFNSETSFRLESHIPENIRSFQLRSFSEMCREDILQHQLLNANHSDTNPLGCSQGTLATASISFDMQKSAVKDNSSLENCIPGSDQSGLVLRNSEPNIILTQRLIG* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2499 403 SMART finulus 172 221 IPR011598 GO:0046983
Pvu3g2499 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 227 IPR036638 GO:0046983
Pvu3g2499 403 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Pvu3g2499 403 CDD bHLH_AtPIF_like 167 228 - -
Pvu3g2499 403 Gene3D - 161 227 IPR036638 GO:0046983
Pvu3g2499 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Pvu3g2499 403 PANTHER TRANSCRIPTION FACTOR SPATULA 75 345 - -
Pvu3g2499 403 Coils Coil 205 225 - -
Pvu3g2499 403 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 75 345 IPR031066 -
Pvu3g2499 403 MobiDBLite consensus disorder prediction 156 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2499 Pvu-Chr3 46683436 46686983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2499 130 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 53.363 5.55e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2499 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2499 - - pvu:PHAVU_003G242900g 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2499 3 46683436 46686983 Pvu3g2499 3 46683436 46686983 ECH
Pvu2g0179 2 1940119 1941298 Pvu3g2499 3 46683436 46686983 PCT