Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2498 ATGCAATTACTACCTGGAATTGTGGGAAATGGTGCCATAGTTAGTAATGCTGGAGCAAATACATATTACCCTCTGAGTAATCATGCTAGCTCTTCAACTTGGGTTCCTCCACTGGGCTCACGAGGAATGCACTATCCTGCTGCAGAAAGTAGTCCTGTCTCTTGGAACCACCATGGTTTTATATCGCCTGCTATTCCACCCACTGTCATTCATGAACCCGCTTTTCCGCTACCACAATTTCCTTCTGAGGAAACGAGAAGAAGGCTTCCAAATGAGGTTCGATCTATCCTTGATTCTTTACGCTATGGTCAGGCTCTAAGGTTCGAGGAATTGATGATCCTTGACTACTCACTTGTGTTACGTGCGTTTGAGATAGAGCACCCTGAACTGTTTGGGACATCGCCATCCTCGGGACTGAGTCTGGAAACGATAGCACAGTACATGGATAATGAGACTTTCTTGGTTGATGATGGAGATGATTCAGAAGAAAACAAAGAAAAATGCCCCATCTGTCTGGAAGAATTTAAGAACGGAGAGGAAATCGGGAAGCTGCATTCATGCGTGCACAAGTTTCACCTTGATTGCATCAAAACTTGGCTCAACCGCAAGAACCTTTGCCCCGTGTGCAGAAGAACTGCGTTGGAAACGCAGAATGACCAAAATGCAGGTGGTAGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGTAGTTAACGGTGAAGGTGGCAGAGAATAG 732 0.4631 MQLLPGIVGNGAIVSNAGANTYYPLSNHASSSTWVPPLGSRGMHYPAAESSPVSWNHHGFISPAIPPTVIHEPAFPLPQFPSEETRRRLPNEVRSILDSLRYGQALRFEELMILDYSLVLRAFEIEHPELFGTSPSSGLSLETIAQYMDNETFLVDDGDDSEENKEKCPICLEEFKNGEEIGKLHSCVHKFHLDCIKTWLNRKNLCPVCRRTALETQNDQNAGGRAGAGAGAGAVVNGEGGRE* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2498 243 CDD RING-H2_PA-TM-RING 168 210 - -
Pvu3g2498 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 130 215 - -
Pvu3g2498 243 SMART ring_2 168 209 IPR001841 -
Pvu3g2498 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 215 IPR045191 GO:0061630
Pvu3g2498 243 Pfam Ring finger domain 167 210 IPR001841 -
Pvu3g2498 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 229 IPR013083 -
Pvu3g2498 243 MobiDBLite consensus disorder prediction 219 243 - -
Pvu3g2498 243 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Pvu3g2498 243 SUPERFAMILY RING/U-box 167 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2498 Pvu-Chr3 46668438 46670769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2498 86 216 C3H Transcription Factor Family AT2G15530 32.895 1.03e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2498 - K10635 pvu:PHAVU_003G242800g 460.299