Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2497 ATGCAGATCATGGAGCGTGAAGTTTTCTTGGTTGTTGATGGAAATGATCCAAAAGAAAATAAAGAAAAATGCCCCGTCTGTCTGGAAGAATTTTGCAGCGGAGAGTATATTGGGAAGCTGCATTCATGTGAGCACAAGTTTCACTTTGATTGCATTAAACAGTGGCTCATGCACAGGAATCTTTGCCCCGTCTGCAGAAGAACTGCGTTGGAAAGGCGTAATGACCAAAGTGTAGTATACGTATTTGAATAA 252 0.4127 MQIMEREVFLVVDGNDPKENKEKCPVCLEEFCSGEYIGKLHSCEHKFHFDCIKQWLMHRNLCPVCRRTALERRNDQSVVYVFE* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2497 83 SMART ring_2 24 65 IPR001841 -
Pvu3g2497 83 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 4 71 - -
Pvu3g2497 83 SUPERFAMILY RING/U-box 18 76 - -
Pvu3g2497 83 Pfam Ring finger domain 23 66 IPR001841 -
Pvu3g2497 83 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 81 IPR013083 -
Pvu3g2497 83 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 71 IPR045191 GO:0061630
Pvu3g2497 83 ProSiteProfiles Zinc finger RING-type profile. 24 66 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2497 Pvu-Chr3 46660662 46661184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2497 19 71 C3H Transcription Factor Family AT2G15530 50.943 5.35e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2497 - K10635 vra:111241966 139.428