Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2496 ATGAGAAGAAGGCTTCCACCTGAGGTACGCTCCATGCTTTTACCTTCTAAGGTTCACTCTATCTTGGAATCTCTACGCAATGGTGGCGGTCTAATCTTTGAGATAGAGAACGCTGAACCGTCTACGGGACTAAGTCTCGATACGATCATGCAGCACATGGAACGTGAGACTTTCCTGGAAGCTGTTGGAGATGGTCCAGTAGAGTATGAACAAAGATGCATCATCTGTTTGGAAGAATTTGACAACGAATCGGATCTCGGGAAGCTGGAGCAATGTGACCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCATGCAGAAGAACCTTTGCCCCGTGTGCAGAAGAGTTGCGTTGGAAATTCAGCCTAATATCCCAAATGAATATGGTTATTTCTTTGCGTAA 405 0.4494 MRRRLPPEVRSMLLPSKVHSILESLRNGGGLIFEIENAEPSTGLSLDTIMQHMERETFLEAVGDGPVEYEQRCIICLEEFDNESDLGKLEQCDHKFHFDCIKQWLMQKNLCPVCRRVALEIQPNIPNEYGYFFA* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2496 134 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 41 120 IPR045191 GO:0061630
Pvu3g2496 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 119 IPR013083 -
Pvu3g2496 134 Pfam Ring finger domain 72 115 IPR001841 -
Pvu3g2496 134 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Pvu3g2496 134 SUPERFAMILY RING/U-box 66 127 - -
Pvu3g2496 134 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 41 120 - -
Pvu3g2496 134 SMART ring_2 73 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2496 Pvu-Chr3 46647701 46649887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2496 41 120 C3H Transcription Factor Family AT2G15530 44.578 7.34e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2496 - K10635 pvu:PHAVU_003G242600g 281.952