Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2489 ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCATCGACGGGGACGATGAGAACATCAAAGGCAAAAGGGTTGGATCTGTTTCTAATTCGAGCTCTTCCGCTGTGGTAATCGAGGACGGATCAGAAGAGGAGGAGGAGGACGAAGAGGAGGACGAAGAAGGTGGCAGAAGAAGCATGAAGAAACGAAGCAGCAAGATTTTCGGGTTCTCTGTGACCCAAGATTATGAGTCCATGGACAGTGACCACCCACCTGTGACAAGACAGTTTTTTCCGGTGGAAGAGGCCGACGTGGCGGTTGCATCGGGTGGTGGAAGCCCCACCTTCCCTCGGGCTCACTGGGTAGGTGTAAAATTTTGCCAATCAGAAGCACTTGGTGCTGGAAAGTCAGTTGAAGTCTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGGAGTTCTCAGTATAGAGGAGTCACCTTTTACAGAAGAACGGGTCGGTGGGAGTCCCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGTGCCTATGATCGTGCGGCCATCAAGTTCCGAGGAGTCGAGGCTGACATAAACTTCAATATTGAAGATTATGAAGACGACTTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTCCTTCGCCGACAAAGCACTGGATTCCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGTCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACCGAGATTGAAGCTGCAAAGGCTTATGACAAAGCAGCCATCAAATGCAACGGCAAAGAGGCCGTAACCAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCCGGTGCAGAATCCACGGGTAACGCTGCAGATCATAATCTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGGCCGGCAATAATCAGGCGTTGGGGAATCACGCCACAAATGCTGGAAATCATGATCAACACCTCCCATCTGAATCTAATTGGCGAAATGGGGGAAGCAAGCCTAAGCTGGTGAATATACTGCCAAAACCATGTAATAGAGGCAACAAGGACACACATGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGAGGATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTCCAGTGAGATGCAAAGATATGGTCCCTACAGGTCTCCCGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCTCCAATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTGTCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGA 1554 0.4826 MWDLNDSPDQRKDEESEGCSSLKTSIDGDDENIKGKRVGSVSNSSSSAVVIEDGSEEEEEDEEEDEEGGRRSMKKRSSKIFGFSVTQDYESMDSDHPPVTRQFFPVEEADVAVASGGGSPTFPRAHWVGVKFCQSEALGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKCNGKEAVTNFDPSIYENELNSGAESTGNAADHNLDLSLGNSSSKAGNNQALGNHATNAGNHDQHLPSESNWRNGGSKPKLVNILPKPCNRGNKDTHGRDVHGESEALRMLSQTHLHSPASSEMQRYGPYRSPGGESQMLQNFAPIHPPNFHFPSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSGFPQQIRPSSQGWLQKNGFHTLMRPS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2489 517 CDD AP2 254 314 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 MobiDBLite consensus disorder prediction 37 51 - -
Pvu3g2489 517 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g2489 517 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 515 - -
Pvu3g2489 517 ProSiteProfiles AP2/ERF domain profile. 163 219 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 515 - -
Pvu3g2489 517 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Pvu3g2489 517 ProSiteProfiles AP2/ERF domain profile. 255 312 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 Pfam AP2 domain 254 303 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 MobiDBLite consensus disorder prediction 52 66 - -
Pvu3g2489 517 MobiDBLite consensus disorder prediction 1 77 - -
Pvu3g2489 517 CDD AP2 163 220 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 MobiDBLite consensus disorder prediction 322 399 - -
Pvu3g2489 517 MobiDBLite consensus disorder prediction 322 377 - -
Pvu3g2489 517 PRINTS Ethylene responsive element binding protein signature 256 267 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 PRINTS Ethylene responsive element binding protein signature 294 314 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 Gene3D AP2/ERF domain 254 313 IPR036955 GO:0003700|GO:0006355
Pvu3g2489 517 Gene3D AP2/ERF domain 162 221 IPR036955 GO:0003700|GO:0006355
Pvu3g2489 517 SMART rav1_2 255 318 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 SMART rav1_2 163 225 IPR001471 GO:0003700|GO:0006355
Pvu3g2489 517 SUPERFAMILY DNA-binding domain 254 314 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2489 Pvu-Chr3 46544077 46547812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2489 1 352 AP2-EREBP Transcription Factor Family AT4G36920 66.485 2.57e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pvu3g2489 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2489 K09284 - gmx:100792442 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2489 3 46544077 46547812 Pvu3g2489 3 46544077 46547812 ECH
Pvu2g0171 2 1860815 1864323 Pvu3g2489 3 46544077 46547812 PCT