Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2487 ATGGAACAAGGAGAAGGAGGAAGCACGAGGAGGAGAGGGAAAGAGGGTGAAACCACGCGCTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCGCGGATTTGGCTTGGTTCCTATTCCACGCCAGTCGCGGCGGCGCGTGCTTACGATACCGCCGGCTCCGCACCCGCTGCCTCTGACATGTCCGCTGCCTCTATCAGGAAGAGGGCCACCGAGGTCGGCGCCAGAGTCGACGCGCTCCACCGCCAGCACCCGCACGCTTCCGCCGTCGGAGAATTTGCTGACCGGGTCGACCTGAATAAGACACCCGAACCCGAAAATTCGGATTGTGACTGGGACGGGGATTAG 381 0.6037 MEQGEGGSTRRRGKEGETTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAGSAPAASDMSAASIRKRATEVGARVDALHRQHPHASAVGEFADRVDLNKTPEPENSDCDWDGD* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2487 126 SMART rav1_2 20 93 IPR001471 GO:0003700|GO:0006355
Pvu3g2487 126 CDD AP2 19 63 IPR001471 GO:0003700|GO:0006355
Pvu3g2487 126 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g2487 126 Gene3D AP2/ERF domain 19 82 IPR036955 GO:0003700|GO:0006355
Pvu3g2487 126 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Pvu3g2487 126 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Pvu3g2487 126 MobiDBLite consensus disorder prediction 95 119 - -
Pvu3g2487 126 Pfam AP2 domain 19 63 IPR001471 GO:0003700|GO:0006355
Pvu3g2487 126 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 66 120 - -
Pvu3g2487 126 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 63 - -
Pvu3g2487 126 MobiDBLite consensus disorder prediction 95 126 - -
Pvu3g2487 126 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 1 63 - -
Pvu3g2487 126 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 66 120 - -
Pvu3g2487 126 ProSiteProfiles AP2/ERF domain profile. 20 63 IPR001471 GO:0003700|GO:0006355
Pvu3g2487 126 SUPERFAMILY DNA-binding domain 20 63 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2487 Pvu-Chr3 46504117 46504556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2487 21 124 AP2-EREBP Transcription Factor Family AT5G67190 47.205 6.46e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu3g2487 AP2 1.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2487 K09286 - gmx:100784157 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2487 3 46504117 46504556 Pvu3g2487 3 46504117 46504556 ECH
Pvu2g0169 2 1837177 1838211 Pvu3g2487 3 46504117 46504556 PCT