Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2475 ATGGCTATCGGCGACGATGCACAGCTCCATTCTCCCTCGATCCTCGATGCCCTTCTCTGCGAAGAGCGTGACACCTTCGAGGAAGATTTGGATGCGAGCGGTGCTGATTGTGAGATCAACAACGATGACCCATCTGGGAGAAAGTTGCAATCTTTGCCTTTGGTTTTGCTTCAGAATGATCTGTTCTGGGAAGATGAAGAGCTTGTGTCTTTAATCTCGAAAGAGGGAGAGACCCATTCGTGTTCTCTTATTGCCATTGCCGATGGGCCCTTAGAAGGGTCTCGTGTGGAGGCTGTGAACTGGATTTCAAAAGTTTGTGGACATTATGGGTTTTCTGCTTTGACCACTGTTCTTGCCGTCAACTACTTTGATCGGTTCATCCCAAGTCTGAGGTTTCACACGGACAAGCCGTGGATGACACAGCTTACTGCTGTTGCTTGTTTGTCCCTTGCTGCAAAAACGGAAGAGACCCATGTGCCGCTTCTTTTGGACCTTCAAGTGGAGGAATCAAGGTTTGTGTTTGAGGCGAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCAACTCTTAAATGGAGGATGCATCCGGTGACTCCAATTTCTTTCTTTGAACACATTGTCAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAATTTCTATGGCGTTGTGAGCGGGTTCTTCTCAATGTCACTGCGGATTCAAGGGCTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACCATGATCCATGTTATTAAAGAGATTGAATCATTTAACGCTACAAAGTACATTGATCAGCTTCTGGGTCTACTAAAGATTAGCGAGGAACAAGTGAACCAGTGCTATAAGCTCATGCAGAAAATTTTAGGTCGCAATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGTCTATCTGAACCAAGTAGCCCAGGTGGTATCCTTGATTCAACTTTCAGTTGTGATAGCTCAAATGATTCGTGGGCATTGTCATCATCAGTCTCACTCTCACTGGAGCCGCCGTTTAAGAGGAGAAGACCTCAGGACCAGCAAATGCGATTGCCTTCTGTTAGTCGCGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1116 0.4624 MAIGDDAQLHSPSILDALLCEERDTFEEDLDASGADCEINNDDPSGRKLQSLPLVLLQNDLFWEDEELVSLISKEGETHSCSLIAIADGPLEGSRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFIPSLRFHTDKPWMTQLTAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVTADSRAMSYLPSTLAAATMIHVIKEIESFNATKYIDQLLGLLKISEEQVNQCYKLMQKILGRNEGIYSLHQKRKRLSEPSSPGGILDSTFSCDSSNDSWALSSSVSLSLEPPFKRRRPQDQQMRLPSVSRVSIDVLNSPR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2475 371 SMART Cyclin_C_2 197 310 IPR004367 -
Pvu3g2475 371 Pfam Cyclin, N-terminal domain 94 194 IPR006671 -
Pvu3g2475 371 Gene3D - 196 285 - -
Pvu3g2475 371 PANTHER CYCLIN-D3-2 10 354 - -
Pvu3g2475 371 SMART cyclin_7 100 188 IPR013763 -
Pvu3g2475 371 CDD CYCLIN 94 187 IPR013763 -
Pvu3g2475 371 Pfam Cyclin, C-terminal domain 197 295 IPR004367 -
Pvu3g2475 371 Gene3D - 93 195 - -
Pvu3g2475 371 SUPERFAMILY Cyclin-like 62 195 IPR036915 -
Pvu3g2475 371 PANTHER CYCLINS 10 354 IPR039361 -
Pvu3g2475 371 SUPERFAMILY Cyclin-like 179 291 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2475 Pvu-Chr3 46363155 46365135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2475 14 361 Core Cell Cycle Gene Families AT5G67260 52.394 1.25e-111 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2475 K14505 - gmx:100785030 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0157 2 1724756 1726646 Pvu3g2475 3 46363155 46365135 ECH
Pvu9g0696 9 11553719 11555872 Pvu3g2475 3 46363155 46365135 ECH
Pvu1g0254 1 2226702 2228463 Pvu3g2475 3 46363155 46365135 ECH
Pvu3g2475 3 46363155 46365135 Pvu3g2475 3 46363155 46365135 ECH
Pvu3g2475 3 46363155 46365135 Pvu2g0157 2 1724756 1726646 PCT