Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2456 ATGACCTTCCTAAGGGAGGATGAAGTTGATGATCATGATCATGATCAGCATGTGTCAATCAATGACAATCATGCCAACTGTGAAATTGTGACTCCTGAAGGTGACAACTTAGGAGAATGGCTGAGTTTAAGCCTCAAAGGAGAGATGCCTGTGGAGGCAGCAGAAGAACAAAACTCATCAAAGCCTCACCACAGCAAGGTGTTCTCATGCAACTTCTGCATGAGAAAGTTTTACAGCTCACAAGCCTTAGGGGGTCACCAGAATGCACACAAGAGGGAAAGAGAAGCAGCTAGAAGCTACCAGTCTCATAGGATGATGGGAACAAGATCACCAATGGGGTTTGCTTACACTTCTCTGGCATCTAGGTTTCTGGGAATACAGCCTCACTCCATTAATGTGCACAAACGAGGCAGAGAAAGGTCTGGTATGGTGGCTAGATTCAAGGATGGCAACAGTAATGGGGCTGGAGTGGCATCATGGACACCCTTTATGCTTGAACAGGCTGTGGATTTGTATTGGCCAGGTAGCTTTCGGGTGGACTTGCCAAAGCAAGAATCTGATGTTAATAAGATTGACTTAGATCTTCGCCTCTGA 594 0.4596 MTFLREDEVDDHDHDQHVSINDNHANCEIVTPEGDNLGEWLSLSLKGEMPVEAAEEQNSSKPHHSKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSHRMMGTRSPMGFAYTSLASRFLGIQPHSINVHKRGRERSGMVARFKDGNSNGAGVASWTPFMLEQAVDLYWPGSFRVDLPKQESDVNKIDLDLRL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2456 197 Gene3D Classic Zinc Finger 50 115 - -
Pvu3g2456 197 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 197 - -
Pvu3g2456 197 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Pvu3g2456 197 SUPERFAMILY beta-beta-alpha zinc fingers 65 95 IPR036236 -
Pvu3g2456 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Pvu3g2456 197 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2456 Pvu-Chr3 46162017 46162610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2456 25 188 C2H2 Transcription Factor Family AT1G24625 36.970 5.97e-22 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2456 - - ccaj:109809498 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2456 3 46162017 46162610 Pvu3g2456 3 46162017 46162610 ECH