LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g2454	ATGTCTCGGAACCCGCAAGAGCAGCCACTGTTGTCGGACTCCTTTCAGGAAGAAGAGGAGCGGCAAGAAACAGCCTACGAATCCTCGGAGAAGATCGTGGTGGTGGGAATCGACGAGTCTGATAGCGAGGAGAATTGGGGGAGAGTGCCTCCTTTCTCCTGGAAGAAGCTATGGCTCTTTACTGGGCCGGGCTTTCTCATGAGCATAGCGTTTCTGGACCCGGGCAACCTCGAGGGGGACCTTCAGGCCGGTGCTATTGCCGGCTACTCCCTGCTGTGGCTTTTGATGTGGGCCACGGCCATGGGCCTCTTGATCCAGCTCCTCTCCGCCCGCCTCGGCGTCGCCACCGGGAAGCACCTTGCCGAGCTTTGCAGGGAGGAGTACCCTGCATGGGCCCGGATAGTGCTTTGGGTAATGGCCGAACTCGCTCTCATTGGCTCCGATATTCAGGAGGTTATTGGAAGCGCTATTGCTATCAGAATTCTCAGTCGTGGGGTTGTGCCCCTTTGGGCTGGAGTCGTCATCACTGCTCTTGATTGTTTTATTTTTCTCTTTCTAGAGAACTATGGTGTGAGGGCATTAGAAGCTTTTTTTGCTGTTCTCATTGGTTTGATGGCAATCTCGTTCGCGTGGATGTTTGGTGAAGCAAAGCCAAGTGGCAAGGAACTGCTTCTTGGCATTTTGATTCCAAAACTCAGCTCCAGAACTATACAACAGGCTGTTGGAGTTGTGGGGTGCCTTATCATGCCTCACAACGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCATGAAGCTATTAATTACTACTCTATAGAGTCCACCCTTGCCCTTGTAGTCTCCTTTATCATAAATATATTTGTCACAACAGTCTTTGCTAAGGGGTTTTATGGTTCTGAACTTGCAAACAGCATTGGTCTTGCAAATGCAGGACAGTATCTTGAGGAGACATATGGGGGTGGTCTGTTTCCAATTTTATATATATGGGGTATTGGGCTATTAGCAGCAGGTCAAAGTAGCACTATTACTGGTACTTATGCTGGACAATTCATCATGGGAGGTTTTCTAAATTTAAGATTAAAGAAGTGGACAAGGGCGTTGATTACCCGAAGTTGTGCAATAATCCCAACCATGATAGTTGCTCTTTTATTTGATAGTACAGAGGAATCGTTAGATGTTCTGAATGGGTGGCTCAATGTTCTTCAGTCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTATCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAAAATTGGCTCTGTTCTCAAGATTGCATCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGACGGAATTCTTTTCCTCCGAAGTTAATGGTCTCTTGTTTGGCGCTGTAGTGAGTGTAATAACTGCTGCGTATGTTGCATTCGTACTATACCTTATCTGGAGGGCCATTACCATTTTACCTTGGCAAAGCATAACACGAGTAAAGACAGTTGTTCATTCAGAGAGTTAG	1551	0.4732	MSRNPQEQPLLSDSFQEEEERQETAYESSEKIVVVGIDESDSEENWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARIVLWVMAELALIGSDIQEVIGSAIAIRILSRGVVPLWAGVVITALDCFIFLFLENYGVRALEAFFAVLIGLMAISFAWMFGEAKPSGKELLLGILIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVHEAINYYSIESTLALVVSFIINIFVTTVFAKGFYGSELANSIGLANAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWTRALITRSCAIIPTMIVALLFDSTEESLDVLNGWLNVLQSVQIPFALIPLLYLVSKEQIMGTFKIGSVLKIASWLVAALVIVINGYLLTEFFSSEVNGLLFGAVVSVITAAYVAFVLYLIWRAITILPWQSITRVKTVVHSES*	517

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g2454	516	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	15	515	-	-
	Pvu3g2454	516	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	15	515	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	MobiDBLite	consensus disorder prediction	1	27	-	-
	Pvu3g2454	516	Hamap	Divalent metal cation transporter MntH [mntH].	43	465	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	PRINTS	Natural resistance-associated macrophage protein signature	136	162	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	PRINTS	Natural resistance-associated macrophage protein signature	166	185	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	PRINTS	Natural resistance-associated macrophage protein signature	191	212	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	PRINTS	Natural resistance-associated macrophage protein signature	240	263	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	PRINTS	Natural resistance-associated macrophage protein signature	347	366	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	PRINTS	Natural resistance-associated macrophage protein signature	375	392	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	PRINTS	Natural resistance-associated macrophage protein signature	409	428	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	Pfam	Natural resistance-associated macrophage protein	78	439	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu3g2454	516	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	55	433	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g2454	Pvu-Chr3	46129964	46133923	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g2454	31	502	Inorganic Solute Cotransporters	AT2G23150	78.947	0.0	772

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g2454	K21398		-	gmx:100812381	926.006

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu3g2454	3	46129964	46133923	Pvu3g2454	3	46129964	46133923	ECH
	Pvu2g0145	2	1609576	1613213	Pvu3g2454	3	46129964	46133923	PCT