Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2439 ATGTGTAATTATCCTTACACACGCATTAAATATGCGCACGAACCACCAGCAATACTTCTCCGCTTCTTGCTAGTGTGCACCCTTGTCGCCTTGCGTGCGCCGGTTGCGCAACCCCCTAACGTGCGCATCCCCACCCACCTCATCGAAACTAAGACCACCACAATCCTTCATCAGCGCAACAGAACCCAGATCTCGGGTTCCAATCCCCAACCCATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTATTCGCCCCAAAGAGTACTGGGATTATGAATCTCTCACCGTTCAATGGGGCGATCAGGATGATTATGAGGTTGTGCGAAAAGTGGGAAGGGGGAAGTATAGTGAGGTTTTTGAAGGCGTAAATGTTAATAGCAACGACCGCTGTATAATCAAGATTCTCAAGCCTGTTAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGACTATGACATACGCTATTATATATACGAGCTTCTCAAGGCCTTAGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGGAAACTTCGCTTGATCGATTGGGGTCTTGCTGAATTTTATCACCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGGCCTGAACTTCTAGTTGATTTGCAAGATTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAGCCTTTCTTTTATGGTCACGACAACCATGATCAACTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTAGTGGGAAGGCACAGTCGCAAACCTTGGTCTAAATTTATTAATGCTGATAATCAACATCTCGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATACGATCACCAAGACAGGCTTACAGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGCAGCAGAATGAGGACACAATAA 1215 0.4255 MCNYPYTRIKYAHEPPAILLRFLLVCTLVALRAPVAQPPNVRIPTHLIETKTTTILHQRNRTQISGSNPQPMSKARVYTDVNVIRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGVNVNSNDRCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2439 404 PANTHER CASEIN KINASE II SUBUNIT ALPHA 16 404 IPR045216 GO:0004674|GO:0006468
Pvu3g2439 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Pvu3g2439 404 SUPERFAMILY Protein kinase-like (PK-like) 72 394 IPR011009 -
Pvu3g2439 404 Gene3D Transferase(Phosphotransferase) domain 1 182 390 - -
Pvu3g2439 404 Pfam Protein kinase domain 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2439 404 ProSiteProfiles Protein kinase domain profile. 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2439 404 SMART serkin_6 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g2439 404 Gene3D Phosphorylase Kinase; domain 1 105 181 - -
Pvu3g2439 404 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Pvu3g2439 404 CDD STKc_CK2_alpha 86 390 IPR045216 GO:0004674|GO:0006468
Pvu3g2439 404 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 16 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2439 Pvu-Chr3 45961686 45968724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2439 103 390 Core Cell Cycle Gene Families AT1G76540 29.126 5.39e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pvu3g2439 Pkinase 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2439 K03097 - gmx:100819679 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2439 3 45961686 45968724 Pvu3g2439 3 45961686 45968724 ECH
Pvu2g0129 2 1464941 1470439 Pvu3g2439 3 45961686 45968724 PCT