Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2430 ATGAGTTGCAACGGCTGCAGAGTTCTTCGAAAGGGATGTAGCGAATCCTGTGTGTTGCGTCCTTGTTTGCAGTGGATCGAAACCGCCGAAGCTCAAGGCCATGCCACTGTCTTCGTTGCCAAATTCTTTGGCCGTGCTGACCTCATGTCCTTCGTTTCCAACGTTCCAGAAAATCAAAGACCTGCTCTGTTTCAGTCCCTGCTGTTCGAAGCCTGCGGGAGAACGGTCAACCCTGTCAACGGTGCTGTGGGCCTTCTCTGGACCGGAAACTGGCACGTCTGCCAGGCGGCCGTGGAGACCGTACTCCGCGGCGGCACGCTCAGGACCATGCCGGAGCTCATGGACCTGACCTCTCCCGCTGCAGCCGCCGACGAGACATCGGAAGTTGCATGCTCCGACATTTGGAGAATCCGACACCCGAACCCGACTTGCGGCTTCACGAACTCCAGATCTCATAACAAAGTCTCCTCCGCCAGCAAACGCAAGCGGTTGGAGGAGCCGGCGAAGCTGCAGGCGGCGCCGAATCTCGATCTCCGGCTGACGCCGATTTTTCTGCAGAAGAAGGTTGAGAATCGGCGGCCGGTGTCGCCGTCGATGACCTCCGAGGAGTCTGGCACGACGACGGCGTGCTTGGAGAGCAAATTTGGGGATCAGTGGGGTCACAGTGGAGACCGGAAAGTTCTCAACCTTTTCATTTGA 699 0.578 MSCNGCRVLRKGCSESCVLRPCLQWIETAEAQGHATVFVAKFFGRADLMSFVSNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRTMPELMDLTSPAAAADETSEVACSDIWRIRHPNPTCGFTNSRSHNKVSSASKRKRLEEPAKLQAAPNLDLRLTPIFLQKKVENRRPVSPSMTSEESGTTTACLESKFGDQWGHSGDRKVLNLFI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2430 232 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Pvu3g2430 232 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Pvu3g2430 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - -
Pvu3g2430 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2430 Pvu-Chr3 45862977 45864555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2430 1 232 AS2 family AT4G37540 58.130 7.35e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu3g2430 LOB 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2430 - - gmx:100816480 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0124 2 1403702 1405256 Pvu3g2430 3 45862977 45864555 ECH
Pvu3g2430 3 45862977 45864555 Pvu3g2430 3 45862977 45864555 ECH
Pvu3g2430 3 45862977 45864555 Pvu2g0124 2 1403702 1405256 PCT