Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2426 ATGCTGGTTGTGACTGTGAGAGAGTTCGACCCAAATAAAGACACAGAGAGAGTAGAAGCGGTTGAAAGAATATGTGAGGTTGGACCCAGTGGGAAGCTTTCTCTCTTCACCGACCTCCACGGTGACCCTATTTGCAGGGTCCGCAACTCACCTACTTTCCTCATGCTGGTAGCCGAAATTGGGCAAGAGACAGTGGGAATGATAAGGGGTTGCATCAAAACCGTTACATGCGGAAAGAAGCTCCACAGGCATGGAAAGAATAGCACCGAACCTGGTTCCAAACAGGTCCCTGTCTACACCAAACTGGCCTACATATTAGGCCTCCGGGTTTCTCCACACCACAGGAGAATGGGAATAGGGTTGAAGCTGGTGCAGAGAGTGGAGGAGTGGTTCAGAGAGAATGGAGCGGAGTACGCTTACATGGCAACAGAAAAGGACAACGTGGCATCCGTTAAGCTTTTCACCGACAAATGCGGCTACTCAAAGTTTCGCAGCCCCTGCATCCTCGTCAACCCCGTTTTCGCTCACGCACTCACACCCTCTTCCAACTTCTCCATAATACAACTTGCTCCAAATGACGCCGAGTTGCTCTACCGCACCAAGTTCGCCACAACCGAGTTCTTCCCGCGCGACGTCGACTCCATCCTCACTAACCACCTCAGTCTCGGCACCTTCCTCGCCGTTCCGCGCGGCTCATACTCTCCCGACACGTGGCCCGGTTTACCCCGCTTTCTCGCGGACCCACCCTCCTCCTGGGCCCTCCTCAGCGTGTGGAACTGCAAGGACGTGTTCACGCTCCAGGTGAGGGGCGCGTCGCGCGTGAAGAAGGCCCTCGCCAAGACCACTCGCCTCCTCGACCGCGCCTTCCCCTGGCTGCGCCTTCCCTCCATCCCCAACCTCTTCCAGCCATTTGGGTTTCACTTTTTGTACGGGCTCGGAGGGGAGGGCCCACAGGCCCAGAAGATGGTCAGGGCTTTGTGCGCCTTCGCTCATAACCTCGCCAAGGATGGTGGCTGCCAGGTGGTGGCGACTGAGGTTTCAGGTCTGGAACCCCTACGCTGCGGCATCCCACACTGGAAGATGCTGTCTTGCGAAGAGGATTTGTGGTGCATCAAGAGACTCGGGGAAGATTACAGCGATGGTTCTGTTGGTGATTGGACCAAATCCCCTCCCGGATTCTCAATTTTTGTTGATCCCAGAGAGATCTAA 1209 0.5558 MLVVTVREFDPNKDTERVEAVERICEVGPSGKLSLFTDLHGDPICRVRNSPTFLMLVAEIGQETVGMIRGCIKTVTCGKKLHRHGKNSTEPGSKQVPVYTKLAYILGLRVSPHHRRMGIGLKLVQRVEEWFRENGAEYAYMATEKDNVASVKLFTDKCGYSKFRSPCILVNPVFAHALTPSSNFSIIQLAPNDAELLYRTKFATTEFFPRDVDSILTNHLSLGTFLAVPRGSYSPDTWPGLPRFLADPPSSWALLSVWNCKDVFTLQVRGASRVKKALAKTTRLLDRAFPWLRLPSIPNLFQPFGFHFLYGLGGEGPQAQKMVRALCAFAHNLAKDGGCQVVATEVSGLEPLRCGIPHWKMLSCEEDLWCIKRLGEDYSDGSVGDWTKSPPGFSIFVDPREI* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2426 402 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE-RELATED 4 401 - -
Pvu3g2426 402 Pfam Acetyltransferase (GNAT) family 50 160 IPR000182 GO:0016407
Pvu3g2426 402 Gene3D - 36 165 - -
Pvu3g2426 402 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 4 179 IPR000182 GO:0016407
Pvu3g2426 402 CDD NAT_SF 55 140 - -
Pvu3g2426 402 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 36 161 IPR016181 -
Pvu3g2426 402 PANTHER N-ACETYLTRANSFERASE 4 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2426 Pvu-Chr3 45806095 45808656 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Pvu3g2426 Acetyltransf_1 1.5e-17 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2426 - - gmx:100804109 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2426 3 45806095 45808656 Pvu3g2426 3 45806095 45808656 ECH
Pvu2g0122 2 1361340 1363160 Pvu3g2426 3 45806095 45808656 PCT