LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g2424	ATGAAACCTCATCATCATCATTTCACCTTCTTTTTCATTCTATCATCATTCTCTCTACTCCCCACTTCCCAAGCTACCAACACAACCCAATTCCGCATTCTCAATGAAACAAGAAGGATTCTCCACCAGCCTTTCTTCCCGGAGCTCTCAGCTCCGCCGCCACTCACCCCACCGCCGCCTCCGCCACCGGATATTCCTTCTTCTCCCGACATTCCTTTCTTCAATGAGTATCCCGCGGGGCAGCCGCCGCCAGTGCAGAATCTTCCTCCCTCGACAACCTCTGGTGCCGTGATCGCGAACCCAACGGCGACGCAGCCCACAAAGCCGGCGAAGAAGGTGGCAATTGCGATCTCCGTGGGAATCGTGACGCTGGGAATGTTCTCCGCATTGGGCTTCTTCTTGTACAGGCACAGAGCAAAACACCCAGTGGAAACGCAGAAACTCGTTTCTCGGAGGCTTCCGGAAGATTCTCCGCGGGCCCCACCACCCTCGAGCTTCCTCTACATTGGGACGGTGGAGCCTGCCAGAACGTCGCTCACCGAACCCAACGGAACGAACACTATCACTTCTCCTTATCGAAAGCTTGATTCTATAAAGCTTAACTCCGATCACCGTTACCGCCCCAGTCCAGAGTTGCAGCCGCTGCCACCGCCTCACAAGCTGCCGGACGAAAGCCACTCGCCGCCGGCAGGTTTCTCCGACTCATCGTCTTCCGAGGAGGAATGCTGTGAGACAGCATTTCATTCGCCGCACGGCTCGTCGCTAAGCCGGGAAGAGAATTGTTTCACCCCTGTCTCGCGCCACAGTTGCCTTGCCGCCGCCATGCCAGCGACGGCGGCTGCTGCTCCGGTGGTTCCTTACTCGAAGAGAACTTCACCGAAATCCCGGTTCTCCGCTCCTTCGCCGGATATAAGAAACATGGTCTTACCGTCGATGAAGCATTCTCCGGCACCGGCACCGGCACCGGCACCGGCGCCATCAGCTTCAACCAAATATCAGCAAATAGAAAAATCAACTACTTTGGGTCCTTCTAGAAGACCAAAATTCTCATCGCCTCCCCCAGCACCGAATTTGACTCATCTCATTAAGCCTGCTCCTGCTCCTCCTCCTCCTCCCCCTCCCCCAGCACCGAATTTGACTCATCTCATTAAGCCTGCTCCTGCTCCTCCTCCTCCTCCCCCTCCCCCGCCGCCGCTGCCGCCGTCGCGGAATGGTTGGTCTCCGTCAATTAGTACATCTTCGTCCTCTGTGTCAAGGAAGCAGCGAGAGTCTTGGTCTCCAAATGAAGGAGGATCTTCTGCTAACAGTGTTAGTGTAAGGAAAGGTTGTTCTGAGGAAGTTGAGAAAAGACATGCAGGTGATGACGTGGATGGAGTGAAACCCAAGTTGAAGGCTCTGCATTGGGATAAAGTTTGTGCTACTTCGGACCGTACCACTGTGTGGGATCAGTTAAAATCCAGCTCCTTTCAGTTAAATGAGGACATGATGGAGACCCTGTTTGGCTGCAAATCTACTGGTTCTGCTTTTAAAGAGAGTGTGACTAGAAGATCAGTTCTTCCGCCTGTTGAACTCGAGAATAGGGTGTTAGACCCCAAGAAATCCCAAAACATAGCTATACTACTAAGGGCACTTAACGTCACAAGAGATGAGGTGTGCGAAGCTCTTTTAGATGGGAACCCTGAAGGTTTGGGAACTGAGCTATTGGAGACTCTAGTGAAGATGGCTCTAACAAAGGAGGAGGAAATAAAACTTAAAACTTATGATGGTGACCTATCAAGACTTGGTTCTGCAGAAAGATTTCTTAAAGCAGTGCTCGATATCCCTTTAGCTTTTAAAAGAATTGAAGCCATGCTGTACAGAGCTAATTTTGAAACAGAAGTTAACTACCTTAGGAAGTCCTTTCAGACACTGGAGGCAGCAAGTGAGGAATTAAAGAACAGTCGGTTATTCCTCAAACTTCTCGAAGCTGTTCTAAGGACAGGAAACAGAATGAATGTTGGCACTAACCGTGGTGATGCTAAATCTTTCAAACTGGACACACTTTTAAAACTGGTAGATATAAAGGGCACAGATGGGAAGACAACACTTCTCCACTTTGTGGTCCAAGAGATCATTAGATCTGAAGGAACAGGTGGTGAATCTGCAAATGAAAATGCTCAAAACCAAACAACTCGCCAATTCAACGAGGACGAGTTCAGAAAGAAAGGATTGCAGGTTGTGGCTGGACTGAGTAGAGACCTAGGTAATGTAAAAAAGGCAGCAGGAATGGACTCGAATGTGTTAAGAAGCTATGTCTCAAAGCTTGAAATTGGGCTTGATAAAGTGAGCTTAGTTTTGCAATGCAGAAAACCAGATATGTATGGAAATTTCTTTAACTCAACTGGGCTATTTCTGAAAGATGCTGAAGAGGAAATTGTTAGGATCAAGGCTGATGAGAGAAAGGCCTTGTTCCTTGTGAAAGAAGTTACAGACTACTTTCATGGTGATGCAGCAAAGGAAGAAGCACACCCTTTCAGAATTTTTATGATTGTGAGAGACTTTCTAAATAGTTTGGATCAAGTCTGTAAAGAAGTGGGAAGGATGCAGGATAGAACTGTGGTTGGTTCAGCTAGATCCTTCAGGATAGCCGCAAGTGCATCATTACCTGTTCTCAACAGGTACCATGCAAGACAAGATAGAAGTTCAGATGAGGAAAGCTTATCCCCCTAG	2709	0.4865	MKPHHHHFTFFFILSSFSLLPTSQATNTTQFRILNETRRILHQPFFPELSAPPPLTPPPPPPPDIPSSPDIPFFNEYPAGQPPPVQNLPPSTTSGAVIANPTATQPTKPAKKVAIAISVGIVTLGMFSALGFFLYRHRAKHPVETQKLVSRRLPEDSPRAPPPSSFLYIGTVEPARTSLTEPNGTNTITSPYRKLDSIKLNSDHRYRPSPELQPLPPPHKLPDESHSPPAGFSDSSSSEEECCETAFHSPHGSSLSREENCFTPVSRHSCLAAAMPATAAAAPVVPYSKRTSPKSRFSAPSPDIRNMVLPSMKHSPAPAPAPAPAPSASTKYQQIEKSTTLGPSRRPKFSSPPPAPNLTHLIKPAPAPPPPPPPPAPNLTHLIKPAPAPPPPPPPPPPLPPSRNGWSPSISTSSSSVSRKQRESWSPNEGGSSANSVSVRKGCSEEVEKRHAGDDVDGVKPKLKALHWDKVCATSDRTTVWDQLKSSSFQLNEDMMETLFGCKSTGSAFKESVTRRSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVCEALLDGNPEGLGTELLETLVKMALTKEEEIKLKTYDGDLSRLGSAERFLKAVLDIPLAFKRIEAMLYRANFETEVNYLRKSFQTLEAASEELKNSRLFLKLLEAVLRTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGTGGESANENAQNQTTRQFNEDEFRKKGLQVVAGLSRDLGNVKKAAGMDSNVLRSYVSKLEIGLDKVSLVLQCRKPDMYGNFFNSTGLFLKDAEEEIVRIKADERKALFLVKEVTDYFHGDAAKEEAHPFRIFMIVRDFLNSLDQVCKEVGRMQDRTVVGSARSFRIAASASLPVLNRYHARQDRSSDEESLSP*	903

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	90	105	-	-
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	210	224	-	-
	Pvu3g2424	902	PANTHER	FORMIN-RELATED	9	379	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Pvu3g2424	902	PANTHER	FORMIN-RELATED	373	902	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	405	440	-	-
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	46	105	-	-
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	327	346	-	-
	Pvu3g2424	902	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	453	877	IPR015425	-
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	280	454	-	-
	Pvu3g2424	902	PANTHER	FORMIN-LIKE PROTEIN 6	9	379	-	-
	Pvu3g2424	902	PANTHER	FORMIN-LIKE PROTEIN 6	373	902	-	-
	Pvu3g2424	902	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	389	864	-	-
	Pvu3g2424	902	SMART	it6_source	453	866	IPR015425	-
	Pvu3g2424	902	Gene3D	Formin, FH2 domain	456	863	IPR042201	-
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	229	258	-	-
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	203	258	-	-
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	347	404	-	-
	Pvu3g2424	902	Pfam	Formin Homology 2 Domain	459	851	IPR015425	-
	Pvu3g2424	902	MobiDBLite	consensus disorder prediction	47	69	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g2424	Pvu-Chr3	45765514	45770511	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g2424	407	892	FH2 protein (formin) Gene Family	AT5G67470	69.043	0.0	629

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g2424	-		-	gmx:100803578	1315.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu3g2424	3	45765514	45770511	Pvu3g2424	3	45765514	45770511	ECH
	Pvu2g0120	2	1301815	1307724	Pvu3g2424	3	45765514	45770511	PCT