Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2414 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCGCTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAATTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTTAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCTCTTAAGAGGAACCTACCTGCCCCCAAAATTGACAATAACCATATGGCCTTAAGTACTGTAGTTCGACATGATGAAGTTCTTGATACTAAGCCTTTAGCAGTTTCTGGTGGACCATTGCGATCTCCTAATTTGAAAGAACAAATATCGAGGTTGGTGGATAATCATATATTGGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAGGGTGCCATTATTTCTTACATAGAGGAAAAATATCGGTCTCCACCAAATATCAGTAAATTACTGTCAACCAAACTGAAGAATATGGTAGCAAGTGGCAAAATAATCAAGGAGAAGCATAAGTACAGGATTGCATCAAGTTCAGTGGTCTCTGATAAAAGAAGATGCTCATCATTGGAGGGGAGGTCCAAAGATCCTTCAGAAGCAAATAGGAATGATGTCAACATCCTTTCAAAATCCCAAATTGATGAAGAGATATCAAAAGTGAAGGGCTTGACAGCTAAAGAGGCAGCTGCTGCTGCTGCAAAAGCGGTGGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTATTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAAATGCTTCATATTTGA 876 0.4315 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLRSPNLKEQISRLVDNHILEAIVNMKEQKGSDKGAIISYIEEKYRSPPNISKLLSTKLKNMVASGKIIKEKHKYRIASSSVVSDKRRCSSLEGRSKDPSEANRNDVNILSKSQIDEEISKVKGLTAKEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2414 291 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Pvu3g2414 291 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu3g2414 291 Gene3D - 2 59 - -
Pvu3g2414 291 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu3g2414 291 CDD SANT_TRF 6 57 - -
Pvu3g2414 291 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Pvu3g2414 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Pvu3g2414 291 SMART h15plus2 104 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu3g2414 291 Coils Coil 239 276 - -
Pvu3g2414 291 PANTHER MYB TRANSCRIPTION FACTOR 1 291 - -
Pvu3g2414 291 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pvu3g2414 291 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
Pvu3g2414 291 SMART sant 4 59 IPR001005 -
Pvu3g2414 291 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pvu3g2414 291 Gene3D - 114 197 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2414 Pvu-Chr3 45681112 45689638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2414 1 288 Single Myb Histone (SMH) Gene Family AT5G67580 55.254 2.18e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu3g2414 Linker_histone 6.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2414 K09422 - gmx:100779583 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0105 2 1188411 1193883 Pvu3g2414 3 45681112 45689638 PCT