Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2406 ATGGCCATGTTTCAGCCTTCTTGTAAGAGGGATGGGATCGAGGGCCAGATTCTAGATCTGGACACGGCGGTGAAAGATGGGGTTTTGGGCGGCGTGGATTCTGGGATTGTGGGGACTGGGGTTGGTGAAAAACTGGATCTTGGGAGAATGATTGAAGAGTTAGACTTGAGTGAAGTTCCCTCTGTCTTCATCTGCCCAATTTCCCTTGAGCCAATGCAGGACCCTGTGACTCTTTGCACGGGTCAGACCTACGAGAGGTCCAACATTCTCAAATGGTTCAGTCTGGGACACTTCACTTGCCCCACCACAATGCAAGAGCTCTGGGACGATTCCATCACACCAAACACTACCCTCTACCGTTTGATATCCACTTGGTTTTCTCAGAAGTACCTTGTGATGAAGAAGAGATCAGAAGACGTCCATGGGAGGGTGTCGGAGCTTGTTGAGACTCTCAAGAAGGTGAAGGGTCAAGCTCGTGTTCTTGCCCTCAAGGAGCTCCATCAAGTGGTGGCTGCTCATGCCACTGCCCGCAAGGTATTGGTCGATGGCGACGGAGTCTCCGTGGTGTCGGCGTTGCTCGGTCCTTTCACTTCCTATGCCGTTGGCTCCGAGGTTATTGGTGTTCTTGTGAGTTTGAACCTGGATTGTGAGTCCAAGAGGAATCTACTGCAGCCTGCGAGGGTTTCTTTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACGAAGATCAATTGCACGCGGCTGATTGAGACACTGATTGAAGGGAAGGATTTCCAGTTGGAGATTTTCAGGAGCCATAGTCTTTTGGTTGGGTTAATGAGGCTCGTGAAAGACAAGAGGCACACAAATGGAATCTGCCCTGGATTGAGGCTCCTCAGGACAGTGTGCTTGCATTCAGAAGTTAAGAGTTTGCTGGTAAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGTCCGAATGTTTGGAATTGGCTCTTTCTATCTTGGATGCACTGGCTTCTGTTCCCGAAGGCAGATTAGCTTTGAAGAATTGTTCTAATACGATACACGTTATGGTGAAATTGTTGATGCGGATCTCTGAAAACTGCACTCAATATGCATTGTCAATACTGTGGTCTGTGTGCAAGCTGGCACCTGAGGAGTGCTCTTTGATCGCTGTGGAAGCAGGACTTGCTGCAAAACTTCTCCTTGTGATCCAAAGCGGTTGCAATCCTATATTGAAACAACAGTCGGCTGAGCTTTTGAAGTTGTGTAGTTTGAATTATTCAGATACAATCTTCATTTCCAAGTGCAAACTTACTAGAACCATTCAATGA 1332 0.4767 MAMFQPSCKRDGIEGQILDLDTAVKDGVLGGVDSGIVGTGVGEKLDLGRMIEELDLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLISTWFSQKYLVMKKRSEDVHGRVSELVETLKKVKGQARVLALKELHQVVAAHATARKVLVDGDGVSVVSALLGPFTSYAVGSEVIGVLVSLNLDCESKRNLLQPARVSLMVDILNEGSIETKINCTRLIETLIEGKDFQLEIFRSHSLLVGLMRLVKDKRHTNGICPGLRLLRTVCLHSEVKSLLVSIGAVSQLVELLSGLESECLELALSILDALASVPEGRLALKNCSNTIHVMVKLLMRISENCTQYALSILWSVCKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2406 443 Pfam U-box domain 59 129 IPR003613 GO:0004842|GO:0016567
Pvu3g2406 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 140 IPR013083 -
Pvu3g2406 443 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Pvu3g2406 443 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 32 442 - -
Pvu3g2406 443 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Pvu3g2406 443 Gene3D - 141 422 IPR011989 -
Pvu3g2406 443 SUPERFAMILY ARM repeat 146 429 IPR016024 -
Pvu3g2406 443 SUPERFAMILY RING/U-box 53 129 - -
Pvu3g2406 443 CDD RING-Ubox_PUB 63 105 IPR045210 -
Pvu3g2406 443 PANTHER WDSAM1 PROTEIN 32 442 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2406 Pvu-Chr3 45611960 45613291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2406 1 443 U-box Gene Family AT3G49810 70.444 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2406 - - gmx:100781741 752.281